Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2157 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAAAATCATCATCAACAACAGATGAATTCAGGGTTAACAAGGTTTAAATCTGCACCAAGTTCTTATTTTTCGAATATTATTGATAAAGAATTCTATGAGCATCTTTTCAATAGACCTTCAAGTCCTGAAACAGAAAGAGTTTTTGCACGGTTTATGAATAGTCTTAGTGGTAGTGGAAGTGGCGGTGGTGGTGATGCTGAAAGTGTTTCTGTTTCTGCTACTGCTTCTGTTGCTGTTGTAGATGATTCACTGACTCAGAATCTATCAAGTGTTCAACAACAACTTCCTATAGTGAAGGAAGAGATTGATCAACAATCTCAAACTATGTCATCAATGAATAATAATAATAATAATAATAATAATAATAATGAAACTATGGATCTCCAACAGCTTCAAAGAACACAAAGTAATATGAATAGTTATGGTTCTAATGTTCCTCAAAATTTTTACCAAAGTTCTGGAAGACCACCTTTGCCAAATCAAATGAAGACTGGTAGAGCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGATTTAATGCTATGAGAGGCATAGGATCTATGGGAGCTGCTAATAGTACTAGCAAAGAAGCAAAGTTTTCTTCTGCAGTAAGGTTAAAGAATGCTTCCAACTACACCTCAGTGTTAGGAGCTGAAATTGGGAATAGTAGCATTCCACAAAATAATCCTGAACCTGAAGGTTTTGCCGAAACCCGGGGTAACGATTTTATCCCGGGTTTCCCCTTAGGTACTACATGGGAAGATACTGCAATGATAGCTGACAATATTACCGGTCTAAAAAGATTCCGAGATGATGATGATGTAAAACCATTTTCTGCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACAGGAGGCCAGCCTCCTACTACTCCTTTGGCTCATCAGATGAGTTTGCCGAATACTACGGCGGAGTTAGCAGCCATTGAGAAGTTTTTGCAGTTCTCGGATTCTGTTCCGTGCAAAATTCGCGCCAAACGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAACGAATGAGGAAACTACAAGATCTTGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTACAAAATCAAGTTGAGACTCTATCAGACAATCGAGCTAAGTGCACATGTTCACACAAGCGATAA 1296 0.385 MESDLQQHPTMFLDHQNHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGDAESVSVSATASVAVVDDSLTQNLSSVQQQLPIVKEEIDQQSQTMSSMNNNNNNNNNNNETMDLQQLQRTQSNMNSYGSNVPQNFYQSSGRPPLPNQMKTGRANLIRHGSSPAGLFSNINIETGFNAMRGIGSMGAANSTSKEAKFSSAVRLKNASNYTSVLGAEIGNSSIPQNNPEPEGFAETRGNDFIPGFPLGTTWEDTAMIADNITGLKRFRDDDDVKPFSAGLNPAETKNETGGQPPTTPLAHQMSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVETLSDNRAKCTCSHKR* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2157 431 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 430 - -
Tpr3g2157 431 Pfam Helix-loop-helix DNA-binding domain 366 412 IPR011598 GO:0046983
Tpr3g2157 431 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 430 - -
Tpr3g2157 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 422 IPR036638 GO:0046983
Tpr3g2157 431 Gene3D - 362 430 IPR036638 GO:0046983
Tpr3g2157 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Tpr3g2157 431 SMART finulus 367 417 IPR011598 GO:0046983
Tpr3g2157 431 Coils Coil 401 428 - -
Tpr3g2157 431 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2157 Tpr-Chr3 19912057 19915690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2157 1 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.045 7.70e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g2157 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2157 - - gmx:100803833 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2157 3 19912057 19915690 Tpr3g2157 3 19912057 19915690 ECH
Tpr6g1556 6 16860433 16863110 Tpr3g2157 3 19912057 19915690 ECH