Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2147 ATGAACAACAATTGGCTTTCTTTCCCTCTTTCTCCTTCTCATCCTTCCTTACCTTCTAATGATCTTCAAGCAACTCAATATCATCACTTTCCTCTTGGTTTAGTCAATGAACACATCGAAAACCCTTTCCAAAATCATGATTGGAATCTGATGAACACACATAGCAGCAACGAAGTACCAAAGGTTGCAGATTTTCTAGGTGTGCACAAGTCTGAAAATCACTCAGATCTTGTTGCACAAAACGAAATTCAATCAAATGATTCAGATAGTTATTTGTTTACAAATAACAACAATACTTTCATGGCAATGCAAAACCAAGTGGTAACAACATGCACCAATGAGTATCAAGAAAAGGTTAGTAATAGTAATTTGCAATCATTGACATTATCAATGGGAAGTGGTAAAGATTCAACATGTGAAACTAGTGGTGATACTAGTGCAAACACTCTTGAAGTAGCTGCACCTAAAAGAACTTCAGAAACCTTTGGACAAAGAACTTCAATATATCGTGGTGTAACAAAACATAGATGGACCGGAAGATATGAAGCTCACCTTTGGGATAACAGTTGTAGAAGGGAAGGACAGTCAAGAAAAGGCCGCCAAGTCTATTTAGGTGGATATGATAAAGAAGAGAAAGCTGCTAAGTCCTATGATTTAGCTGCACTTAAGTATTGGGGTACATCCACCACTACTAACTTTCCAGTTAGCAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTAGCCTCTATTAGAAGGAATAGCAGTGGTTTCTCTAGGGGTGCATCTAAGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGGGTTGCCGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACCGAAGAAGAGGCTGCAGAAGCATACGACATAGCAGCAATTAAATTCAGAGGACTCAACGCCGTCACAAACTTTGACATGACTCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACACTCCCAATTGGAGGAGGTGCTGCAAAAAGACTAAAAGAAGCACAGGCTCTAGAAACTTCAAGAAAACGCGAAGAAATGCTCGCACTCAACTCATCGTCTTTCCAATACGGAACAACATCAAGCTCAAGCAATAACAGGCTTCAACCTTACCCTCTCATGCATTATCATCATCAATTTGAACAACAACAACAATTACCTCAACCATTGTTAACTTTACAAAACAACCATGAAAACATATCTCATGATCAATTCTCTCAACAACAACAACATCATCAAGGTGGTGGTTATTTTCAAACACAGCTTGAGTTACAGCAACAGAACAACCAAACATCTCAGTATTACAATGGTTATTTTCAGAATCATCCTGGTTTGTTTCAGTTGAATAATATGGGATCATCTTCTTCTTCATCTTCTGTGATGGGAAATAATGTTGGTGGTGGAGGGTCTAGTGGGATTTATAGTAATAGTGGAGGGTTAATTGGTAATAATGGTGTTGATGAGGAATTTGTGCCGGTTAAGGTTGATTATGACATGGCAGCTGTTGATGGAGGTGGTTTTGGCGGCTGGTCGGCGGCAGGAGAGAACATGCAGACGTCAGCTGCTACAGCTGATTTGTTTACAATGTGGAATGACTATGAGCCAAGAGAAAATTAA 1680 0.3958 MNNNWLSFPLSPSHPSLPSNDLQATQYHHFPLGLVNEHIENPFQNHDWNLMNTHSSNEVPKVADFLGVHKSENHSDLVAQNEIQSNDSDSYLFTNNNNTFMAMQNQVVTTCTNEYQEKVSNSNLQSLTLSMGSGKDSTCETSGDTSANTLEVAAPKRTSETFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAAKSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREEMLALNSSSFQYGTTSSSSNNRLQPYPLMHYHHQFEQQQQLPQPLLTLQNNHENISHDQFSQQQQHHQGGGYFQTQLELQQQNNQTSQYYNGYFQNHPGLFQLNNMGSSSSSSSVMGNNVGGGGSSGIYSNSGGLIGNNGVDEEFVPVKVDYDMAAVDGGGFGGWSAAGENMQTSAATADLFTMWNDYEPREN* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2147 559 SUPERFAMILY DNA-binding domain 269 329 IPR016177 GO:0003677
Tpr3g2147 559 Pfam AP2 domain 168 226 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 Pfam AP2 domain 269 320 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 ProSiteProfiles AP2/ERF domain profile. 270 328 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 552 - -
Tpr3g2147 559 ProSiteProfiles AP2/ERF domain profile. 168 234 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 CDD AP2 269 328 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 SMART rav1_2 168 240 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 SMART rav1_2 270 334 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 CDD AP2 167 236 IPR001471 GO:0003700|GO:0006355
Tpr3g2147 559 Gene3D AP2/ERF domain 269 330 IPR036955 GO:0003700|GO:0006355
Tpr3g2147 559 Gene3D AP2/ERF domain 168 236 IPR036955 GO:0003700|GO:0006355
Tpr3g2147 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 552 - -
Tpr3g2147 559 SUPERFAMILY DNA-binding domain 167 236 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2147 Tpr-Chr3 19781024 19784561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2147 3 553 AP2-EREBP Transcription Factor Family AT1G51190 59.729 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr3g2147 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2147 K09285 - gmx:100788471 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2147 3 19781024 19784561 Tpr3g2147 3 19781024 19784561 ECH