Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2142 ATGGCTAAAGGGAAAACTAGTTTCGGTTTAATGGAGAAGTCTTGGTCTGCAGATGAAAAAGTAGACTCAAATGGGATCGATGATCTTAAGAAAACTTTGTTACAAACTCAAGAAGCTAATGTTACACCTGACCACACATGTGCCATCTGCCTTGAAGACTGTTGCGTTGGAGAGAAGCTCAGGATTCTTCCTTGCTGTCACCAGTTTCGTGCTACCTGTGTGGATTCTTGGTTTAATTTGTGGAGAACCATTAGCCCAGTTAGCAAGCGTGATGCAAGAATGGGTTTTGATTGA 294 0.4218 MAKGKTSFGLMEKSWSADEKVDSNGIDDLKKTLLQTQEANVTPDHTCAICLEDCCVGEKLRILPCCHQFRATCVDSWFNLWRTISPVSKRDARMGFD* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2142 97 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 38 91 - -
Tpr3g2142 97 PANTHER RECEPTOR HOMOLOGY REGION, TRANSMEMBRANE DOMAIN- AND RING DOMAIN-CONTAINING PROTEIN 3 38 91 - -
Tpr3g2142 97 SUPERFAMILY RING/U-box 37 83 - -
Tpr3g2142 97 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 93 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2142 Tpr-Chr3 19736189 19745768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2142 42 97 C3H Transcription Factor Family AT1G22670 60.714 1.96e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2142 K15692 - gmx:100793048 92.0485