Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2127 ATGAGGAAGCCAGAGGTATCATCTGGAAAAAACAACAATAAGCTAAGAAAAGGGTTGTGGTCACCAGAAGAAGATGATAAGTTGATGAACTACATGTTAAACAGTGGACAAGGTTGTTGGAGTGATGTAGCAAGAAATGCTGGATTGCAAAGGTGTGGAAAAAGTTGTAGGCTAAGATGGATTAATTATTTGAGACCTGATCTTAAACGTGGTGCATTCTCACCACAAGAAGAAGAACTTATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCAGCACGTTTACCCGGAAGAACAGACAATGAAATCAAGAACTTCTGGAATTCAACAATAAAGAAAAGACTCAAGAACATATCGTCAAACACCTCACCAAACGCAAGCGATGAATCCTCATACGATCCTAACAAAGACAATAACAACATGGTAGGAGGGTTTATAACTTCTTCAACAGTACAAGATCAACATCATATTGATAATCATTTTATGCCTATGTTCAATACATCATCTCCACCATCAATACAAAACACAGTTTTCAACACCATCATGTCATCATCTAATGGTGGATTTTTCAACAATAATAGTACTACAGGAACATTCTTCTCACAGAATAATAATCATGACAACAAAAGTTATTATTTGGAAAAAATGTTTGGGAGTGTAAATATTAATGGTGCAGAAGGGGTAGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATAATAGTACTATTACTTCTGAAAATAATACTATAAAAATGGAGAATATTAATGCATGCAATATTGGAGAAGATACTAATTACAATATTAGTAGTTATAACTTTGATGACATAAACAACATTGTTAACAATTGCAATGTTGTTAAGAGAATTGATCAAAATAGAGCTGTTGATGAAGTGGAGAATTTATTTCATGGAGATTTAACTGTTGCAGATTGGGACTTAGAAGATTTGATGAAAGATGTTTCATCTTTTCCCTTTCTTGATTTTTCAAATTGA 1014 0.3373 MRKPEVSSGKNNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNISSNTSPNASDESSYDPNKDNNNMVGGFITSSTVQDQHHIDNHFMPMFNTSSPPSIQNTVFNTIMSSSNGGFFNNNSTTGTFFSQNNNHDNKSYYLEKMFGSVNINGAEGVEMEIYNVPPLESVNNSTITSENNTIKMENINACNIGEDTNYNISSYNFDDINNIVNNCNVVKRIDQNRAVDEVENLFHGDLTVADWDLEDLMKDVSSFPFLDFSN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2127 337 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Tpr3g2127 337 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Tpr3g2127 337 PANTHER MYB DOMAIN PROTEIN 55 8 263 - -
Tpr3g2127 337 PANTHER MYB DOMAIN PROTEIN 55 259 336 - -
Tpr3g2127 337 CDD SANT 72 112 IPR001005 -
Tpr3g2127 337 Gene3D - 14 70 - -
Tpr3g2127 337 PANTHER MYB TRANSCRIPTION FACTOR 259 336 - -
Tpr3g2127 337 PANTHER MYB TRANSCRIPTION FACTOR 8 263 - -
Tpr3g2127 337 MobiDBLite consensus disorder prediction 122 145 - -
Tpr3g2127 337 CDD SANT 20 64 IPR001005 -
Tpr3g2127 337 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tpr3g2127 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Tpr3g2127 337 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Tpr3g2127 337 SMART sant 69 117 IPR001005 -
Tpr3g2127 337 SMART sant 16 66 IPR001005 -
Tpr3g2127 337 Gene3D - 71 145 - -
Tpr3g2127 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Tpr3g2127 337 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2127 Tpr-Chr3 19572266 19575151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2127 3 335 MYB Transcription Factor Family AT3G08500 45.042 3.79e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g2127 Myb_DNA-binding 9.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2127 K09422 - gmx:100785810 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2127 3 19572266 19575151 Tpr3g2127 3 19572266 19575151 ECH
Tpr7g4529 7 53840107 53842621 Tpr3g2127 3 19572266 19575151 PCT