Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2109 ATGAACCGAATGGAACACGAAAAAGCTGCAATCTTGGAAGCAATATCGGTAGACGAAATTGAGATACCAATTGTATCAGAAAGACTTGATTTAATTCCAATGACAACAATGTCATCTAGCAACAATTCTGTTTGTAGGTTTTCCAGAAAGGAAAAAAATGTTTGTGCATCAAATGAATCGGTGAAGAAACTTTCTTTGCTTATAGTTTTCTATGCTATTGTTATGGTTGTTGAACTTATTGGGGGTTTGAAAGCTCATAGTTTATCTGTTATCAGTGATGCTGCGCATTTGCTTTCTGATATAGCCGGATTTGCTATCTCTCTCTTTGCGGTGTGGGCTTCGGGTTGGGAAGCCACACCTCATCAATCCTTTGGATACAATCGTCTCGAGGTTTTGGGTGCTCTTTTATCTGTTCAGCTAATTTGGTTTATTTCTGGTTTTTTAATATATGAAGCATTTGGTAGACTTGTTTATAGAAATGCTAGTGTGAATGGAAAACTCATGTTTGCAATAGCAACATTTGGATTTGTTCTTAATTGTATCATGGTTTTATGGCTTGGTCATGATCATAGTCATCATCATGGTTTTGGACGCTCAGATCATGATCATAGCCATCACCATGAAGCCACGGATCACGAACATAGCCATCACCATGGTCATGATCATAGTCATCATCAGTGCGGTGAAGACTCGGCTCATGACCATGGGACGGAGGAACTACCTAAAATAATTGATGAGGAGAATCTTACAATGCTTTCAAATGGTGAGAGGAATATCAATGTTTTGAACATAAATATTCAAGGAGCCTATTTGCATGTCATGACTGATATGATTCAATCTATCGGAGTAATGATTGCTGGAGGCGTAATATGGGCAAAACCGGAATGGTTTATGGTTGATCTCTTATGTACTCTCATATTCTCAGTTTTATCTTTAAGTACTACTCTGCCGATGCTTAGGAATATTTTTGGCATTCTGATGGAAAGAACACCTAGTGAGATTAATATCATTCAGCTGGAAAATGGTCTTAGAAGTATCAAGGGAGTGCAGGAGGTTCATGACTTGCACGTTTGGGCTATAACAGTTGGAAAATTGTTTTTATCATGTCATGTAGTGGCTGAGCCTGGCATCAGTTCCATTCATTTACTTGATAAGATTAAACATTATTGTGAAAACACTTATCAAATACAACATGTAACCATACAAATTGAGTAA 1215 0.3753 MNRMEHEKAAILEAISVDEIEIPIVSERLDLIPMTTMSSSNNSVCRFSRKEKNVCASNESVKKLSLLIVFYAIVMVVELIGGLKAHSLSVISDAAHLLSDIAGFAISLFAVWASGWEATPHQSFGYNRLEVLGALLSVQLIWFISGFLIYEAFGRLVYRNASVNGKLMFAIATFGFVLNCIMVLWLGHDHSHHHGFGRSDHDHSHHHEATDHEHSHHHGHDHSHHQCGEDSAHDHGTEELPKIIDEENLTMLSNGERNINVLNINIQGAYLHVMTDMIQSIGVMIAGGVIWAKPEWFMVDLLCTLIFSVLSLSTTLPMLRNIFGILMERTPSEINIIQLENGLRSIKGVQEVHDLHVWAITVGKLFLSCHVVAEPGISSIHLLDKIKHYCENTYQIQHVTIQIE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2109 404 SUPERFAMILY Cation efflux protein transmembrane domain-like 61 328 IPR027469 -
Tpr3g2109 404 TIGRFAM CDF: cation diffusion facilitator family transporter 62 404 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Tpr3g2109 404 Gene3D Cation efflux protein transmembrane domain 61 326 IPR027469 -
Tpr3g2109 404 MobiDBLite consensus disorder prediction 197 232 - -
Tpr3g2109 404 Pfam Cation efflux family 66 327 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Tpr3g2109 404 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 4 404 - -
Tpr3g2109 404 PANTHER METAL TOLERANCE PROTEIN B 4 404 - -
Tpr3g2109 404 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 332 404 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2109 Tpr-Chr3 19429610 19431378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2109 38 404 Inorganic Solute Cotransporters AT3G58810 45.946 2.55e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2109 K14689 - gmx:100789520 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2109 3 19429610 19431378 Tpr3g2109 3 19429610 19431378 ECH