Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2096 ATGAATTCAGAAACGCAACTCGAAACGGCGTCGTACTGGTGCTACAGCTGCACACGCTTCGTTAACCTAACAGATCACACCAACATCGTCTGTCCACACTGCGATAACGGTTTTATCGAAGAGATCCAAGCCGGCGACTCACCTCACCACCGTCTCAGTCCATTTCCCGACGAAACCGTTTCTTCAAGAAGACAAGGCTTCCGCCGCCGCCGTCGTGACGCTGGAAGTCGTTCACCTTTCAACCCTGTCATCGTTCTCCGTGGAAACGGTGAAGACGGTAACGATCAAGACGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGACGGTTCTGGTTTACGTCCGTTACCACCGACTGTTTCGGAGTTTTTACTTGGATCTGGATTTGATCGGTTGTTGGAACAGTTTTCTCAGATCGAGATGAACGGTTTTGGTCGGCCGGAGAATCCACCGGCATCAAAGGCGGCAATTGAATCTATGCCGACGGTTGAGATCTCTGAGGCGCAAGTTAGCTGCGATATGCACTGTGCTGTTTGCAAAGAAGCTTTTGAGTTAGGCGTGGAAGCGCGTGAGTTACCTTGTAAGCATATCTACCATTCCGATTGCATTCTTCCATGGCTTACTGTGCGAAACTCGTGCCCTGTGTGCCGCCACGAGCTTCCTTCGGATCTTAGTAACCCTATTGAAACTAGGGTTTCTGGTCAAATTGATGAAGAAGCGATTGGATTAACTATATGGAGGTTACCAGGTGGTGGATTCGCTGTTGGAAGATTCTCCGGCGGAAGAAGTGCCGGGGAGAGTCATTTTCCAGTTGTGTACACTGAGATGGATGGTGGACTGAATGCAAATGGAGCTCCGAGAAGAATTTCTCGAACGGTTAGAAGCCATAGGGTTACTGAAAGCCGCGGAATTGGAAGAGTTTTTCGTAATTTTTTTTCATTCTTTGGGAGGAATGGTTCTTCTAGGTCAAATTCTGGTTCTGAGAATGTGTCTGTGAGTAGAAGCCGTAGAATAGTGAGTTCAATTTTTAATAGAAACTGGCGAGGAAGTAGAAGAACTATGGAGTTGGAAGATTGA 1080 0.4769 MNSETQLETASYWCYSCTRFVNLTDHTNIVCPHCDNGFIEEIQAGDSPHHRLSPFPDETVSSRRQGFRRRRRDAGSRSPFNPVIVLRGNGEDGNDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEISEAQVSCDMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDLSNPIETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRTVRSHRVTESRGIGRVFRNFFSFFGRNGSSRSNSGSENVSVSRSRRIVSSIFNRNWRGSRRTMELED* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2096 359 SUPERFAMILY RING/U-box 157 224 - -
Tpr3g2096 359 CDD RING-H2_RNF126_like 177 218 - -
Tpr3g2096 359 Pfam Ring finger domain 176 218 IPR001841 -
Tpr3g2096 359 PANTHER OS05G0110000 PROTEIN 9 305 - -
Tpr3g2096 359 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Tpr3g2096 359 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Tpr3g2096 359 MobiDBLite consensus disorder prediction 51 82 - -
Tpr3g2096 359 Pfam Protein of unknown function (DUF1117) 242 347 IPR010543 -
Tpr3g2096 359 SMART ring_2 177 217 IPR001841 -
Tpr3g2096 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 224 IPR013083 -
Tpr3g2096 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2096 Tpr-Chr3 19334512 19336045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2096 116 224 C3H Transcription Factor Family AT5G01980 45.872 4.15e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2096 - - gmx:100792874 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2096 3 19334512 19336045 Tpr3g2096 3 19334512 19336045 ECH
Tpr7g4707 7 55324937 55326606 Tpr3g2096 3 19334512 19336045 ECH
Tpr6g4009 6 45292018 45294432 Tpr3g2096 3 19334512 19336045 ECH
Tpr7g4510 7 53724955 53726590 Tpr3g2096 3 19334512 19336045 PCT