Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2082 ATGGATCCTCGTTTCAGCTCCAATTACACCAACGGTTTCAAATCAAACCAAATTCCAACTACACTCGATGGATTCATAGATAACCCTTTTCTTCATCCACCAAATGATCCAAACACTGAAGAAGATTCTCCATTGGATGAAACTGATTTTTCTGCCACAGTTCTTCGTTACATAAACCAAATGCTTATGGAAGAAGACATGGAGAAAAAACCATGTATGTTTCATGATTCATTGGCTTTACAAGCTGCTGAGAAATCATTCTATGAAGTCATTGGTGAGACATACCCTTCTTCTAGTTCTATTCAAAATCATCACAATGTGGATAGTCCTAATGATAGTAATTTTAGTAGTTATAGCAATTGTGGTACAACTACTAGTAGTAGTAATTCTGTTGAGTTTGAGTCTTATTGGAGTAATTTTGATGTTTCTGAGTATAAGCCTTCTATACTGCAAACCGCGTTTCCTGCTGATTTTGTTTTTCAGGCAAGTTCAATGAATGGTTATGGTACTAGTACTACTAGTACTGGCAGTAGCAATTTCGGTGTAACCAATAGTGGATTTTCGGTTAGTTCTAGGGATGGATTTCCTGATTCGAACTTGTTTAGTAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTTCCGAAAGCGAATCCCTTGGTTATTGACTTGGAGAATAACCACCCTTTTATCCCTTCTTTTAGGAAGGTTCCTCAGGAGGTAGTGGTTAAGACGGAGAGTAGTGAGAGGGAGCATTTTTCTGTTGAGTCTAGGGGGAGGAAGAATCACGAACGGGGAGATGAAACGGATTTACAGGATGAGAGAAGTAACAAGCAGTCGGCTGTTTACACTGATGACAGTGAAATATCGGAGCTGTTTGATAAGGTGTTGCTTGGCACAGGGTGCAGAAAGGAGGGAGATCCTAAGGAAGAGAAGCCTAATGAACAAGTTACGGGTGTGCAGCAGAAAGAAGAAGCCAACAATTCTGGTGGTGGAAAGAGTCGTGCTAAGAAACAAGGCAACAAGAAGGGTGTTGTGGATTTGAGGACAATGTTGATTCTGTGTGCACAATCTATTTCTTCTGATGATCGTGTAACTGCTAAGGAGTTATTAAAGCAGATAAGGCAACATTCTTCTCCACTTGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCAAATGCCATTGAAGCACGCTTGGCTGGCACTGGTACTCAGATTTATACTGCCTTATACTCCAAAAGAAACTCTGCTGCTGACATGGTGAAAGCTTATCAAATGTATATTTCAGCTTGTCCGTTCAAGAAGCTTGCTATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTGGAAACTCTTCACATTGTAGATTTTGGCATCCGTTATGGCTTCCAATGGCCTGCCCTTATTTATCGTCTATCCAAACGACCAGGTGGACCTCCCAAACTGCGCTTGACAGGGATAGAGCTCCCTCAACCTGGCTTCAGGCCTGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTGGCAAGGTATTGTGAACGTTTTAATGTTCCATTTGAGTTTAATGCTATTGCACAGAAATGGGAAACCGTCAAAGTTGAGGACTTGAAGATACAGAAAAATGAACTTCTTGTGGTGAATTGTATATGTCGGTTTAAAAATCTACTTGATGAGACAGTAGTATTGAATAGTCCCAGGGATGCTGTTTTAAAATTAATTAAGAATGCAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTATAATGCCCCATTCTTTGTGACACGGTTCAAGGAGGCTCTTTTCCATTACTCTACAATGTTTGATGTGCTTGACGTCAATGTTGCTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTGGGGGCGGGAGGTAATGAACACTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGAGGCCAGAGACATACAAGCAATGGCAGGTCCGGAACATAAGGGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTCATGCTTGTTGAAGATGGCAACTGCATGCTGCAAGGTTGGAAGGGCCGAATAGTGTACGCTTCATCCTGTTGGGTACCTGCATAG 2187 0.4161 MDPRFSSNYTNGFKSNQIPTTLDGFIDNPFLHPPNDPNTEEDSPLDETDFSATVLRYINQMLMEEDMEKKPCMFHDSLALQAAEKSFYEVIGETYPSSSSIQNHHNVDSPNDSNFSSYSNCGTTTSSSNSVEFESYWSNFDVSEYKPSILQTAFPADFVFQASSMNGYGTSTTSTGSSNFGVTNSGFSVSSRDGFPDSNLFSKSESVLQFERGVEEANKFLPKANPLVIDLENNHPFIPSFRKVPQEVVVKTESSEREHFSVESRGRKNHERGDETDLQDERSNKQSAVYTDDSEISELFDKVLLGTGCRKEGDPKEEKPNEQVTGVQQKEEANNSGGGKSRAKKQGNKKGVVDLRTMLILCAQSISSDDRVTAKELLKQIRQHSSPLGDGSQRLAHCFANAIEARLAGTGTQIYTALYSKRNSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETVKVEDLKIQKNELLVVNCICRFKNLLDETVVLNSPRDAVLKLIKNANPNIFIHTTVNGSYNAPFFVTRFKEALFHYSTMFDVLDVNVAREDPMRLMFEKEFWGREVMNTIACEGSERVERPETYKQWQVRNIRAGFRQLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIVYASSCWVPA* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2082 728 MobiDBLite consensus disorder prediction 311 349 - -
Tpr3g2082 728 MobiDBLite consensus disorder prediction 252 288 - -
Tpr3g2082 728 MobiDBLite consensus disorder prediction 252 293 - -
Tpr3g2082 728 ProSiteProfiles GRAS family profile. 346 726 IPR005202 -
Tpr3g2082 728 MobiDBLite consensus disorder prediction 311 325 - -
Tpr3g2082 728 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 38 727 IPR005202 -
Tpr3g2082 728 Pfam GRAS domain family 355 725 IPR005202 -
Tpr3g2082 728 MobiDBLite consensus disorder prediction 326 342 - -
Tpr3g2082 728 PANTHER SCARECROW-LIKE PROTEIN 14 38 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2082 Tpr-Chr3 19214482 19218727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2082 54 728 GRAS Transcription Factor Family AT1G07530 56.897 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr3g2082 GRAS 4.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2082 - - mtr:MTR_4g064160 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2082 3 19214482 19218727 Tpr3g2082 3 19214482 19218727 ECH