Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2075 ATGGTGCCCAAAATACTCTACATTGCTTTCTTCATCTCTTCATTGTACATTGTTCAAGCTCGAATTCCAGGAGTTTACTCTGGTGGTCAGTGGCAAAATGCTCATGCTACTTTCTACGGTGGATCTGATGCTTCCGGCACCATGGGAGGAGCATGTGGGTATGGAAATTTGTACAGTCAAGGATATGGAGTGAACACAGCGGCATTGAGCACTGCTCTGTTCAACAATGGTTTGAGTTGTGGTGCTTGTTTTGAGATGAAGTGTGCAAATGACAGAGAATGGTGTCATTCAGGGAGTCCTTCAATTTTCATTACTGCAACTAACTTTTGTCCTCCAAATTTTGCTCAACCAAGTGATAATGGTGGATGGTGTAACCCTCCTCGCCCTCATTTTGATCTTGCCATGCCTATGTTTCTCAAGATTGCTGAGTATCGCGCTGGTATCGTCCCCGTTGCTTATCGCCGGGTACCATGTAGAAAGCGCGGGGGAATAAGATTCACAGTTAACGGATTCCGTTACTTTAACCTGGTGCTAATTAGCAACGTAGCAGGTGCTGGAGATATCGTGCACGCCTACGTGAAAGGCACTCGAACCGGGTGGATGCCACTAAGCCGAAACTGGGGTCAGAACTGGCAATCTAACGCGGTTTTGGTGGGCCAGGCACTGTCTTTTCGTGTCTCAAGTAGTGACCGTCGATCTTCAACATCATGGAATATTGCTCCACCTAGTTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGAGTCTAA 774 0.4625 MVPKILYIAFFISSLYIVQARIPGVYSGGQWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEMKCANDREWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVLISNVAGAGDIVHAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPSWQFGQTFTGKNFRV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2075 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Tpr3g2075 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Tpr3g2075 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Tpr3g2075 257 Gene3D - 163 255 IPR036749 -
Tpr3g2075 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Tpr3g2075 257 Gene3D - 18 159 IPR036908 -
Tpr3g2075 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Tpr3g2075 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Tpr3g2075 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Tpr3g2075 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Tpr3g2075 257 PANTHER EXPANSIN 4 256 - -
Tpr3g2075 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Tpr3g2075 257 SMART dpbb_1 66 153 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2075 Tpr-Chr3 19116377 19120125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2075 5 257 Expansin Gene Family AT2G39700 84.980 5.06e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2075 - - gmx:100809139 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2075 3 19116377 19120125 Tpr3g2075 3 19116377 19120125 ECH
Tpr3g2075 3 19116377 19120125 Tpr4g3189 4 37733366 37736529 ECH
Tpr7g4694 7 55218031 55220204 Tpr3g2075 3 19116377 19120125 ECH
Tpr6g3846 6 43661198 43664938 Tpr3g2075 3 19116377 19120125 ECH
Tpr7g4496 7 53613100 53615734 Tpr3g2075 3 19116377 19120125 PCT