Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2068 ATGGAGGGAACTTCTTCATCCTCTACAAAACATGATGATGATGATGATGATGCTGTAGAAATATTTCCAATATCTGATGATGATGAGAAATATGCAGAGGAAATACAATTACAAGAAGCATTAACATTTTCCTCTGCTATTTCAAATACTAACAAAGAAATCCAAGTTATTGATCTTGAAATTGATAATGTCAATGACACCCATTTGAGAAAACTCAAACTAAAAGAGAAAGAGACTTTTAAAGGTGAATCTTCTTCTTCTTCATCTCGGTTGAAACAAATTTCCTACTGTGGAATTTGTATGGAAGCTAAATCTAACGAAGAAATGTTCGAAAACCGAAACTGTTCTCACTCATTTTGTGAAGATTGTGTTGGACTATATCTAGCTGCAAAAATTCAAGAGAATATATCAATGGTAAAATGTCCTGATCCGAAATGCAATGGTATTTTGGAGCCACATAATTGTATTTCAATTATACCAAAAGATGTGTTTGATAGATGGGGAAATGCACTTTGTGAGAATATGGTGATAGGTTCACAGAAATTTTATTGTCCTTTCAATGATTGTTCAGCTATGTTGATGAATGATGAAGTGGAAGCTGTGACTGTTGCGGAATGTCCACATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCGTGGCACGCCGGTGTTGATTGTAGAGAGTTTCAAAGCTTGAAAGATGGCGAGCGAGGAAGGGAAGATTTAATGGCTATGGAACTTGCTAAGAATAAGAGATGGAAAAGATGTCCAAAATGTAGCTACTATGTTGAAAAAAGTGACGGATGTACTCGCATTTCATGCAGGTATAGACAGTTATGTTTTGTTTAA 852 0.3521 MEGTSSSSTKHDDDDDDAVEIFPISDDDEKYAEEIQLQEALTFSSAISNTNKEIQVIDLEIDNVNDTHLRKLKLKEKETFKGESSSSSSRLKQISYCGICMEAKSNEEMFENRNCSHSFCEDCVGLYLAAKIQENISMVKCPDPKCNGILEPHNCISIIPKDVFDRWGNALCENMVIGSQKFYCPFNDCSAMLMNDEVEAVTVAECPHCHRLFCAQCKVSWHAGVDCREFQSLKDGERGREDLMAMELAKNKRWKRCPKCSYYVEKSDGCTRISCRYRQLCFV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2068 283 Gene3D - 224 283 - -
Tpr3g2068 283 SUPERFAMILY RING/U-box 174 231 - -
Tpr3g2068 283 MobiDBLite consensus disorder prediction 1 25 - -
Tpr3g2068 283 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Tpr3g2068 283 ProSiteProfiles TRIAD supradomain profile. 93 283 IPR044066 -
Tpr3g2068 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Tpr3g2068 283 SMART ibrneu5 165 227 IPR002867 -
Tpr3g2068 283 SUPERFAMILY RING/U-box 238 275 - -
Tpr3g2068 283 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 282 IPR031127 GO:0004842|GO:0016567
Tpr3g2068 283 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 282 - -
Tpr3g2068 283 SUPERFAMILY RING/U-box 93 174 - -
Tpr3g2068 283 Pfam IBR domain, a half RING-finger domain 179 227 IPR002867 -
Tpr3g2068 283 ProSiteProfiles Zinc finger RING-type profile. 97 145 IPR001841 -
Tpr3g2068 283 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2068 Tpr-Chr3 19032578 19033429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2068 97 283 C3H Transcription Factor Family AT2G19610 24.623 4.62e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2068 K11975 - gmx:100816161 348.977