Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2064 ATGGAGAGTGATAATAATAGTAATGAGATGATGATGATGATGAATGAGAATAATGGTTCATCATCATCAAGTTCATCATCAAGATGGAATCCAACAAAAGAACAAATAAGCATGTTAGAGAATTTGTATAAGCAAGGAATAAAGACACCAAGTGCTGAAGAAATACAACAGATAACTGCTAGGCTAAGAGTGTATGGTCACATCGAAGGAAAGAATGTGTTTTACTGGTTTCAGAATCACAAAGCTAGACAGAGACAGAAACAGAAGCAAGACAATATGGCTTATTTCAATCGACTTCTTCATAGACCTCACCCCATTTATCCTTCACCACCAATTTATCCAAATGCTATCTGCACACAATATTACGTACCACAACCACAAAGTCAAGAATTCAACTATTACCCTCAAAATCCAAAAGTGCTTCTACCACCTGCAGTAAGTTATAGAAGGAACCAAGCTGAGAAAATCATGTCAAATGGCATGTCGAATAGTATCTGCAATAATCCATTGGTATATAATGAAAACAACATGCAAAAGAGAATCTCTGATTATGAAACGTTGGATTTGTTTCCTCTGCATCCAACTGGCATATTGGAAGGGAAAACAACAAACAACAATGTGTCTTCTATTGTTTCAGTTTCTGCTGATACTCATCATTCTGGTTCCTCTCATCATGTTATCAATCAAGATGATGGTTGTCATGAAAATCAACCTTTCTTTGACTTTTTTAATAATTCTGCAGGACAACGTTCTTAA 756 0.3558 MESDNNSNEMMMMMNENNGSSSSSSSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQDNMAYFNRLLHRPHPIYPSPPIYPNAICTQYYVPQPQSQEFNYYPQNPKVLLPPAVSYRRNQAEKIMSNGMSNSICNNPLVYNENNMQKRISDYETLDLFPLHPTGILEGKTTNNNVSSIVSVSADTHHSGSSHHVINQDDGCHENQPFFDFFNNSAGQRS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2064 251 CDD homeodomain 28 88 IPR001356 GO:0003677
Tpr3g2064 251 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Tpr3g2064 251 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 11 248 - -
Tpr3g2064 251 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 248 IPR044555 GO:0003700|GO:0099402
Tpr3g2064 251 SUPERFAMILY Homeodomain-like 21 91 IPR009057 -
Tpr3g2064 251 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Tpr3g2064 251 Gene3D - 10 100 - -
Tpr3g2064 251 SMART HOX_1 24 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2064 Tpr-Chr3 18965157 18966752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2064 16 247 Wox Gene Family AT5G59340 40.078 8.40e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr3g2064 Homeodomain 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2064 - - gmx:100801698 259.996