Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2054 ATGCGCATAGCTACCATAGTGAATAGTAAAACTCTTCTTTTCCAAAATTCAGCCTTACACTTACATCAATTGTTGCTATGCGTACGCCATCATTCAACAACCAAATTATTCCTCGCAGGGCTTTCCCATAATACGAATGAAACAGTCTTGAGAGACACCTTTAAACAACATGGGCAAATCATTGAAGTTAAAGTAATATGTGACCATAAAACTGGGGAATCAAAAGGGTATGGATTTGTTAGGTTCAATTCTGAAATTGCAGCTACCTCAGCTCGTAAAGAATTGCATGGCCGGATAGTGGATGGTAGACGCATTCGAGTGGGTTATGCGCACAAAGGGTAA 342 0.4006 MRIATIVNSKTLLFQNSALHLHQLLLCVRHHSTTKLFLAGLSHNTNETVLRDTFKQHGQIIEVKVICDHKTGESKGYGFVRFNSEIAATSARKELHGRIVDGRRIRVGYAHKG* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2054 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Tpr3g2054 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Tpr3g2054 113 SUPERFAMILY RNA-binding domain, RBD 28 112 IPR035979 GO:0003676
Tpr3g2054 113 Gene3D - 16 113 IPR012677 -
Tpr3g2054 113 SMART rrm1_1 35 108 IPR000504 GO:0003723
Tpr3g2054 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 112 - -
Tpr3g2054 113 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 7 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2054 Tpr-Chr3 18827429 18828894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2054 34 112 Eukaryotic Initiation Factors Gene Family AT3G16380 41.772 8.25e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2054 K13195 - gmx:100306540 143.28