Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2053 ATGTCTGCCGCTCTCGATATGACCCTCGATGATATCATCAAGAACAACAAAAAATCTGGATCCGGAAACCCTAGAGGCCGTTCTAGACCCGGACCCGGATCCGGACCTGGTCCCGCTCGCCGTTTACCTAACCGTGCAATCAACCGTGCCGCACCTTACTCCGGCGGCGCTAAGGCGCCGGAGACTACGTGGCAGCATGATTTGTATGGAGATCAACATGTGGCTGCGGCGGCGTTTCCTGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACTGGAACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAATGATGATATAAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCATGGCGTTCATTATGACCGGAGTGGCAGATCGAAGGGCACTGCAGAAGTAGTCTTCTCACGGCGACAAGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGCAGCTCCTGTTGTAAATCCACCTATTGGAAATTTTAATGGAGTTCCTCAAAGTGCCCAAGGAAGAATTGGAGATTTACGAGGGCCGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGAGGTCGTGGTGGTGGTCGTGGTGGAGGTCGCGGTAGAGGTCGTGACGAAAAGGTATCTGCAGAAGACCTTGATGCTGAGCTGGAGAAGTATCATGCAGAGGCCATGCAAATAAACTAA 789 0.4956 MSAALDMTLDDIIKNNKKSGSGNPRGRSRPGPGSGPGPARRLPNRAINRAAPYSGGAKAPETTWQHDLYGDQHVAAAAFPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNPPIGNFNGVPQSAQGRIGDLRGPGGRGQGIRRNRGRGRGSGGGRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQIN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2053 262 CDD RRM_THOC4 93 167 - -
Tpr3g2053 262 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 261 - -
Tpr3g2053 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Tpr3g2053 262 SMART FoP_duplication_2 192 262 IPR025715 -
Tpr3g2053 262 SMART rrm1_1 94 166 IPR000504 GO:0003723
Tpr3g2053 262 MobiDBLite consensus disorder prediction 201 246 - -
Tpr3g2053 262 SUPERFAMILY RNA-binding domain, RBD 89 232 IPR035979 GO:0003676
Tpr3g2053 262 Pfam C-terminal duplication domain of Friend of PRMT1 206 256 IPR025715 -
Tpr3g2053 262 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 261 - -
Tpr3g2053 262 Coils Coil 244 262 - -
Tpr3g2053 262 MobiDBLite consensus disorder prediction 1 58 - -
Tpr3g2053 262 Gene3D - 81 246 IPR012677 -
Tpr3g2053 262 MobiDBLite consensus disorder prediction 232 246 - -
Tpr3g2053 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2053 Tpr-Chr3 18823407 18826079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2053 92 221 Eukaryotic Initiation Factors Gene Family AT1G71770 28.188 7.02e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2053 K12881 - gmx:100775827 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2053 3 18823407 18826079 Tpr3g2053 3 18823407 18826079 ECH