Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2029 ATGACACCTCAAGAAGAAAGACTTGTTATGGAGTATCATTCTAAATGGGGAAATAGATGGTCAAGAATTGCGAGAAAATTACCGGGAAGAACAGATAACGAGATTAAGAATTATTGGAGAACACACATGAGGAAGGTGAGAGCACAAGAGAAAAAACATGCAACACCTTCAACAATTTCATCACCTGATCAATCTTCAAGTTGTCAATCATCACTTTTCTCAAACAATAATCATGCTGTGGATTCACATGCTTCTTACCAAGAGGTTGGTGAAGAAAATTACCAAGTCCAAGAAATTGTTGAGGGGTACTCAATGGATGATATTTGGAAAGATATTGCTATGTCAGAAGATGACATTAATATTTTTCAACCTGTTAATGATGGACATAGTGAAGAAAATTGCAACTTTTCTGGTCCTATAATGCCTTCTACATCATCATGGGATTATTCTAATTTGGATCCATTGTGGGTGATGGATGAAGAAGAAAGCAAGATGTTATTCCCTCCTATTGGTGACCAGTATTTTTCCTTCTATGATCAACAAGGGAATACATTTCTAACTGGATAA 567 0.3598 MTPQEERLVMEYHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKVRAQEKKHATPSTISSPDQSSSCQSSLFSNNNHAVDSHASYQEVGEENYQVQEIVEGYSMDDIWKDIAMSEDDINIFQPVNDGHSEENCNFSGPIMPSTSSWDYSNLDPLWVMDEEESKMLFPPIGDQYFSFYDQQGNTFLTG* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2029 188 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Tpr3g2029 188 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 170 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr3g2029 188 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Tpr3g2029 188 CDD SANT 1 43 IPR001005 -
Tpr3g2029 188 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Tpr3g2029 188 MobiDBLite consensus disorder prediction 53 69 - -
Tpr3g2029 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Tpr3g2029 188 MobiDBLite consensus disorder prediction 46 69 - -
Tpr3g2029 188 Gene3D - 2 44 - -
Tpr3g2029 188 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 1 170 - -
Tpr3g2029 188 SMART sant 1 45 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2029 Tpr-Chr3 18564508 18566636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2029 1 177 MYB Transcription Factor Family AT3G46130 46.632 1.68e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr3g2029 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2029 K09422 - gmx:100776886 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2029 3 18564508 18566636 Tpr3g2029 3 18564508 18566636 ECH
Tpr3g2029 3 18564508 18566636 Tpr7g4656 7 54954521 54956213 PCT