Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2026 ATGGCACTTTCTATTGAGAAAGACGTGTTTCCTCAACAATTTTTAACCAATGTTAGGGTTCTTGTGATTGATCATGATATCAATCATCTCAATACTATTGAGAAAATGTGCTCTCAATTCAATTACCCAGTTAAAACATGCTCTAAGGTTTCTGAAGCTTTGAATCTTTTGATGGAAAAAAAAGATTGCTTTGATTTGGTACTAATCGAAGCTCAAATGCCTGATATGAATTCAAATGATTTTTTGCAACAAGTTACACAACAAATCAACATCTCTGTCATTATGATGTGTGTCGATGACACAATAAGTGATGTAAAGAAGGCTATTGAAAACGGGGCTTGTATTTATTGGATCAAACCATTGAGTGAAAATCAAATAAAATACATGTGGAAATATGTTGCATTGAGAATTTGGAATGAAAAAACAAAACAAGAAATTGATGAAACATTTGAGGGTGAATGTATGAAAACAAAGGAGAAAGGTGAAAAGAACAAAGATAAACACGACTCGCCAATGGAAAAATTACGTGTAGTATGGACACCAGAGTTGCATAAAATATTTGTTAGTGCGGTGATGGAACTCGATAGTGATAATGTAGTACCCACAAAAATTCTTGATAAGATGAATGTGCCTGGATTGACAAGAGAGCACGTAGCTAGTCATCTACAGAAGTTTAGGCTTTATCTGAAGGAAAAAGAGAAAGAAAAACAACAGCAAATACAGAACCACCAAAATGACATAATGAAATCATCATTTTGTCCTAACTTTTCTCATGCTATACAACAACACAATTCAATGTCATATGGTTGCGGTTCTTCTCAGCAAGTTTCAAACGAATTAATAGCAAGAAATTTTCCTTATCAATATTTAATGTGGCGGCCACTTTCACCGGAATCCAATAATACATCGCCTCCGCAACAAGAACATCGTGTTAACGATGTTGATCAAACTAGTCCAGCTTCTGTCAACCACCAGATTACAACGACTCGGTCACTTCCAATGTCGTCATTGACAATTGATGCTAATATTGGTGACATTAATGGCAAAGTAACAAGGGCGGAGGAGACAGAGCTTCAGATTCCAACGATTCAGTCACTTCCAATGTCATCATTGGCAATTGATGCTAATACTGGTGACATTAATGACAACGTAACAAGGGCGGAGGAGACAGAGCTCCAGATTCCAACTACTCAGTCACTTCCAATGTCGTCATTGACAATTGATGCTAATATTGGTGACATTAATAGCAAAGTAACAAGGGCGGAGGAGACAGAGCTTCAGATTCCAATGACTCAATCACTTTCAATGTCGTCATCAACAATTGATGCTAATATCGGTGACATTAATGTCAATGTAACAAGGGCAGAGGGGACGGAGCTTGATTCTAGTTTACAAGAGGTTGTAATGAAGCCAAAGGAGGGAACAATTCTAGAAGCATGTGAGTCAGAAAACAAAGTGGAGGGAACACAAAATGTGCAAGGAATGAATTCTGTTACCAACAATGCGGAAATGAAGGAACTACGTAGGGGAATGAGGTTACGCAAACCCAACATCATGCTGAAGGATTACGTGAGAGAGTGA 1581 0.3757 MALSIEKDVFPQQFLTNVRVLVIDHDINHLNTIEKMCSQFNYPVKTCSKVSEALNLLMEKKDCFDLVLIEAQMPDMNSNDFLQQVTQQINISVIMMCVDDTISDVKKAIENGACIYWIKPLSENQIKYMWKYVALRIWNEKTKQEIDETFEGECMKTKEKGEKNKDKHDSPMEKLRVVWTPELHKIFVSAVMELDSDNVVPTKILDKMNVPGLTREHVASHLQKFRLYLKEKEKEKQQQIQNHQNDIMKSSFCPNFSHAIQQHNSMSYGCGSSQQVSNELIARNFPYQYLMWRPLSPESNNTSPPQQEHRVNDVDQTSPASVNHQITTTRSLPMSSLTIDANIGDINGKVTRAEETELQIPTIQSLPMSSLAIDANTGDINDNVTRAEETELQIPTTQSLPMSSLTIDANIGDINSKVTRAEETELQIPMTQSLSMSSSTIDANIGDINVNVTRAEGTELDSSLQEVVMKPKEGTILEACESENKVEGTQNVQGMNSVTNNAEMKELRRGMRLRKPNIMLKDYVRE* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2026 526 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Tpr3g2026 526 SUPERFAMILY Homeodomain-like 172 231 IPR009057 -
Tpr3g2026 526 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 8 326 - -
Tpr3g2026 526 CDD REC_typeB_ARR-like 20 134 - -
Tpr3g2026 526 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 174 227 IPR006447 GO:0003677
Tpr3g2026 526 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 326 IPR045279 GO:0009736
Tpr3g2026 526 SUPERFAMILY CheY-like 17 134 IPR011006 -
Tpr3g2026 526 SMART REC_2 18 130 IPR001789 GO:0000160
Tpr3g2026 526 MobiDBLite consensus disorder prediction 298 320 - -
Tpr3g2026 526 Gene3D - 172 232 - -
Tpr3g2026 526 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Tpr3g2026 526 Gene3D - 17 153 - -
Tpr3g2026 526 Pfam Myb-like DNA-binding domain 176 224 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2026 Tpr-Chr3 18484095 18486611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2026 13 334 Response Regulator Gene Family AT2G25180 31.653 2.81e-41 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr3g2026 Response_reg 2.4e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2026 - K14491 mtr:MTR_8g105600 244.202