Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2023 ATGGCTCCTCCTAAAGGTGATAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAACGGCCAATGCACTCAAGTCAGGCACTGCTATTAAGAAGAAGGCAAAAAAGATCAGAACAACTGTGACTTTCCATCGCCCAAAGACACAAACACAGGACAGGAACCCCAAGTACCCTCGCATTAGTGCCACCCCAAGGAATAAGCTTGATCATTACCAAATTTTGAAGTTCCCACTTACCACCGAGTCGGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATCAAGGATGCAGTCAAGAAAATGTATGACATCCAAGCGAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACTCCTGACTACGATGCATTGGATGTAGCAAACAAGATTGGAATTATCTAA 459 0.4357 MAPPKGDKKADPKAQALKTANALKSGTAIKKKAKKIRTTVTFHRPKTQTQDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2023 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tpr3g2023 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tpr3g2023 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tpr3g2023 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tpr3g2023 152 Pfam Ribosomal protein L23, N-terminal domain 13 61 IPR005633 -
Tpr3g2023 152 TIGRFAM uL23_arch: ribosomal protein uL23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
Tpr3g2023 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 -
Tpr3g2023 152 MobiDBLite consensus disorder prediction 42 56 - -
Tpr3g2023 152 Gene3D - 33 152 IPR012677 -
Tpr3g2023 152 MobiDBLite consensus disorder prediction 1 61 - -
Tpr3g2023 152 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2023 Tpr-Chr3 18453064 18455168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2023 25 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.844 3.22e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2023 K02893 - pvy:116105236 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2023 3 18453064 18455168 Tpr3g2023 3 18453064 18455168 ECH
Tpr7g4653 7 54937404 54939292 Tpr3g2023 3 18453064 18455168 ECH
Tpr7g4456 7 53338811 53340678 Tpr3g2023 3 18453064 18455168 PCT