Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2008 ATGGCTGGAATCAAGGTTTATGAGCTCCGGCAAAAAACAAAAGCAGAACTTTTGAGTCAGTTGAAGGATCTGAAAGCAGAACTTGCTCTTCTTCGCGTCGCTAAGGTCACTGGTGGTGCTCCAAATAAGCTCTCCAAAATCAAAGTTGTCCGGCTTTCAATAGCACAAGTTTTGACTGTGATTTCACAGAAACAAAAGACAGCATTGAGGGAAGTGTATAAGAATAAGAAATACTTGCCTTTGGATCTGCGTCCCAAAAAGACAAGAGCCATTAGAAGACGTCTTACTAAGCATCAGCAATCATTGAAGACAGAGCGTGAGAAGAAGAAGGAAATCTACTTCCCATTGAGAAAATATGCAATCAAGGCGTAA 372 0.4113 MAGIKVYELRQKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKTALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEIYFPLRKYAIKA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2008 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Tpr3g2008 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tpr3g2008 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Tpr3g2008 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Tpr3g2008 123 Gene3D - 78 123 - -
Tpr3g2008 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Tpr3g2008 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tpr3g2008 123 CDD Ribosomal_L29_HIP 8 64 - -
Tpr3g2008 123 Coils Coil 7 34 - -
Tpr3g2008 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2008 Tpr-Chr3 18300909 18302978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2008 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 86.885 2.02e-70 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2008 K02918 - sind:105158851 219.164