Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2006 ATGGCTTTAATCTCACAAACTGAACTACCCTTCAATGAAAATGATTCTCAAGACATGGTCATATACCAAATTCTGAACGAAGCCAATGAACTTAGCAACACAATGGTGCAACAAGAGAGGCGTCAAAATGGCTTAGAATTGAGCAAGAACGTTAAAAAGAAGAACTACAGAGGCGTAAGGCGTAGACGGTGGGGTAAATACGCGGCAGAGATTCGTGACTCGACGCGAAATGGAGCTAGGATATGGCTTGGTACATTTCAAACAGCTGAAGAGGCTGCAATTGCTTATGATAAAGCAGCTTTTAGAATGAGGGGGGCTAAGGCTTTGCTAAATTTTCCATATGAATTTGCTTCAATACAATTGACTTCAACATCGAAGCGTGATTTGAGCTCGGGGAAAATCAACAATAAAGACTCTGAGTCGAGTGCTAGCAACTCTTCTTGTTCAATTGCCTTTGCGACAAGTAGTACTACTACTAATGCTCAATCACAAAGCACTATAGTTACTAGTATTGAAGAGAAATATTACTAA 531 0.4011 MALISQTELPFNENDSQDMVIYQILNEANELSNTMVQQERRQNGLELSKNVKKKNYRGVRRRRWGKYAAEIRDSTRNGARIWLGTFQTAEEAAIAYDKAAFRMRGAKALLNFPYEFASIQLTSTSKRDLSSGKINNKDSESSASNSSCSIAFATSSTTTNAQSQSTIVTSIEEKYY* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2006 176 PANTHER DNA-BINDING DOMAIN 5 139 IPR044808 GO:0003700|GO:0009873
Tpr3g2006 176 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Tpr3g2006 176 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Tpr3g2006 176 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Tpr3g2006 176 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Tpr3g2006 176 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Tpr3g2006 176 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 5 139 - -
Tpr3g2006 176 SUPERFAMILY DNA-binding domain 55 115 IPR016177 GO:0003677
Tpr3g2006 176 Gene3D AP2/ERF domain 54 115 IPR036955 GO:0003700|GO:0006355
Tpr3g2006 176 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2006 Tpr-Chr3 18286794 18287715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2006 9 113 AP2-EREBP Transcription Factor Family AT5G47220 49.606 1.20e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g2006 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2006 K13433 - zju:112489252 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2006 3 18286794 18287715 Tpr3g2006 3 18286794 18287715 ECH