Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2005 ATGGTTTCGTCCAACAAACACTGGCCTAGCATGTTCAAGAGGCCCAATTATGAGAATTCGCAACATCGCGTCAACTCCTTTCTCACTGGTGTTCATAAGGAGGAGAGAACTTCACAACCACCAAGGCCAAGATGGACTCCAAGACCACAGCAAGTCCAAATTCTTGAAGATATCTTCAACTCAGGGATGATGAGTCCTCCAAAGGAAGAAATCAAGAAAATTCGTGAACGGTTACTAGAATATGGTCCAGTTGGTCATGTTAATGTTTTCTACTGGTTTCAAAATCGCAAAGCAAGGAAACTTAAACAAACAAAACCCAAAAATATGAATCCAAGAAAAAGAAAATCCAAAAAAACTCAAAATGCATCCTCATCATCTTCCCCTCATGCATCTTCCAATGAAATAGTGGTACCTAATAATATTGAATTACCTACTACTAATAATGAGGTGGTTAATTTGACTAATGATTCCCCTAATGATACAATCTTTGGAGACCAAAACCTAGGTATTGATGATTTTGACATTCCCATTGAAACTGATTTTTTACTATCTACACCCCCTTTGTTCTCTTTCCCTAGTGAGTTCTCTAATATGACTCAGCAGTTGCCTCAACAAAATGTTGATGTCAACCCTAATTTGCTTATTCATGAGATCTTCATGAACTGTGCAAATGGAATCCCAATGAATGAGCAGTATGATCAAGGGAATATCCAAGATCATGAAGCTGCAATGAATATCATGCAACAACAAGAAGAAGATCCACAACTGATGAGTTTATGTGTGACTTCAAATTTACTCAATGATGATGATATAGCTCTTCCTCCTCTTCCTCCCATTATCATTGATGCACCTGTTGTTGATCCATTCTCCATCACTCAATTTCAAGGTGTGACTTCAAATTCACTCAATGATGATTCAACTCTTCCTTCCATTGTCTTTGATGCACCTGATATTGATCCATTCTCCCTTACTCAATTTCAAGATGTTGGTGAGCCGGATCATTTTATGGCAAAATGTACTGTGAGTATTAACAATTATATAATTGACGTTGATGTGGGCCCCTTCAACATCCGTCAAATTTTTGGAGATGAAGCTATTCTTGTTGATTCCTCCGGCCAGCTTGTTCTCACCGACGAGTGGGGTGTAACTCTTGAGTCACTCCAACATGGTGGTTCTTATTTTCTGGTTTGA 1191 0.3862 MVSSNKHWPSMFKRPNYENSQHRVNSFLTGVHKEERTSQPPRPRWTPRPQQVQILEDIFNSGMMSPPKEEIKKIRERLLEYGPVGHVNVFYWFQNRKARKLKQTKPKNMNPRKRKSKKTQNASSSSSPHASSNEIVVPNNIELPTTNNEVVNLTNDSPNDTIFGDQNLGIDDFDIPIETDFLLSTPPLFSFPSEFSNMTQQLPQQNVDVNPNLLIHEIFMNCANGIPMNEQYDQGNIQDHEAAMNIMQQQEEDPQLMSLCVTSNLLNDDDIALPPLPPIIIDAPVVDPFSITQFQGVTSNSLNDDSTLPSIVFDAPDIDPFSLTQFQDVGEPDHFMAKCTVSINNYIIDVDVGPFNIRQIFGDEAILVDSSGQLVLTDEWGVTLESLQHGGSYFLV* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2005 396 ProSiteProfiles 'Homeobox' domain profile. 38 103 IPR001356 GO:0003677
Tpr3g2005 396 MobiDBLite consensus disorder prediction 120 137 - -
Tpr3g2005 396 Gene3D - 29 125 - -
Tpr3g2005 396 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 IPR044557 GO:0003700|GO:0050793
Tpr3g2005 396 MobiDBLite consensus disorder prediction 100 137 - -
Tpr3g2005 396 CDD homeodomain 50 103 IPR001356 GO:0003677
Tpr3g2005 396 SUPERFAMILY Homeodomain-like 37 105 IPR009057 -
Tpr3g2005 396 MobiDBLite consensus disorder prediction 100 119 - -
Tpr3g2005 396 SMART HOX_1 40 107 IPR001356 GO:0003677
Tpr3g2005 396 Pfam Homeodomain 42 100 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2005 Tpr-Chr3 18269922 18273632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2005 1 99 Wox Gene Family AT2G33880 54.545 1.76e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr3g2005 Homeodomain 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2005 - - mtr:MTR_7g025010 259.225