Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2004 ATGGGTTCGTCGAACAAACATTGGCCTAGCATGTTCAAGAAGTCCAACTATCACAATTCGCAGCATGGCATCAACTCCTCACTTTTATCCACTGGTTGTCATGGTGATGAAAGAACTCCAGAACCAAAGCCAAGATGGAATCCAAAACCAGAGCAAATCAGAGTTCTGGAAGCTATCTTCAACTCAGGGATGATGAACCCTCCAAGGGATGACATTAAGAAAATACGGGAACAATTACAAGAGTATGGCCCAATTGGTGAAGCTAATGTTTTCTACTGGTTCCAAAACCGCAAATCAAGGAGCAAGAACAAGCATAGGAATTTTGCAAAAAGAAAAAACAAAAACTCTGTACCTCCTAATAATAATTCCATAATCTCAGCTCAAACCATCTCAAATGACAATGTCTCTGGGAACCAAAACCTAGCTACTGATTATTTTCACACTCCCATTGAAACTAATTTTCAACTATCTACACCACCTTTATTCTCTTTCCCCAATCAGTTCTCTAATATGACTCAGCAGTTGCCTCAACAAAATGTTGATGTCCCTAATTTGCTTAATCATGAGATCTTAATCCCAATGAATGAGAAGTATGATCAAGGGAATATCCAAGATCATGAAGCTACAATGAATATCATGCAACAACTACAAGAAGATCCACAACTGATCAGTTTAGGTGTGACTTCAAATTCACTCAATGATGATTCAACTCTTCCTCCTCTTCCACCAATTGTTGATGCACCTTTTACCGATCCATTCTCCATTACTCAACTTCAAGGTGTTGGTGAGGCAGATGATTTTTCGAAAAAATGCATTGTGAGTATTAACAACCAGATATTCAAGGTTGACGTTGGGCCCTTTAACATCTGTCAAAATTTTGGAAATCAGGCGGTTCTTGTTGACTCCTCCGGCCAAACTATTCTCACCGATGAGTGGGGTATGACGCTTGACTCACTTCAACATGGTGCTTCTTATTACCTGACGAAGCAAAGAAAAGCGAAAAAGTAG 1008 0.3958 MGSSNKHWPSMFKKSNYHNSQHGINSSLLSTGCHGDERTPEPKPRWNPKPEQIRVLEAIFNSGMMNPPRDDIKKIREQLQEYGPIGEANVFYWFQNRKSRSKNKHRNFAKRKNKNSVPPNNNSIISAQTISNDNVSGNQNLATDYFHTPIETNFQLSTPPLFSFPNQFSNMTQQLPQQNVDVPNLLNHEILIPMNEKYDQGNIQDHEATMNIMQQLQEDPQLISLGVTSNSLNDDSTLPPLPPIVDAPFTDPFSITQLQGVGEADDFSKKCIVSINNQIFKVDVGPFNICQNFGNQAVLVDSSGQTILTDEWGMTLDSLQHGASYYLTKQRKAKK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2004 335 MobiDBLite consensus disorder prediction 30 51 - -
Tpr3g2004 335 ProSiteProfiles 'Homeobox' domain profile. 39 104 IPR001356 GO:0003677
Tpr3g2004 335 Gene3D - 43 109 - -
Tpr3g2004 335 SUPERFAMILY Homeodomain-like 37 106 IPR009057 -
Tpr3g2004 335 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Tpr3g2004 335 MobiDBLite consensus disorder prediction 102 121 - -
Tpr3g2004 335 CDD homeodomain 42 105 IPR001356 GO:0003677
Tpr3g2004 335 SMART HOX_1 41 108 IPR001356 GO:0003677
Tpr3g2004 335 Pfam Homeodomain 43 103 IPR001356 GO:0003677
Tpr3g2004 335 MobiDBLite consensus disorder prediction 36 50 - -
Tpr3g2004 335 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 329 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2004 Tpr-Chr3 18260228 18263796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2004 1 327 Wox Gene Family AT5G45980 35.989 5.27e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr3g2004 Homeodomain 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2004 - - mtr:MTR_7g025010 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2004 3 18260228 18263796 Tpr3g2004 3 18260228 18263796 ECH