Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2001 ATGGGAAAAAGGAAGGCAAAAACAAAGCCACCTCCAAAGAAAAGAATGGATAAGCTTGACACTGTTTTTAGTTGTCCTTTCTGCAATCATGGCTCTAGTGTCGAGTGTCGCATTGATATGAAGAACTTGATAGGGGAAGCTTCTTGCGGAATATGTCAAGAGAGCTTTAGTACTTCCATCACAGCTTTATCTGAGGCAATAGACATATACAGTGAATGGATTGATGAATGTGAACGGGTGAACACCGTAGAAGATGATGGTGCTTAG 267 0.412 MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTSITALSEAIDIYSEWIDECERVNTVEDDGA* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2001 88 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Tpr3g2001 88 Gene3D - 16 82 IPR038567 -
Tpr3g2001 88 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
Tpr3g2001 88 PANTHER UNCHARACTERIZED 1 88 IPR007808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2001 Tpr-Chr3 18240403 18244829 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g2001 Elf1 4.5e-31 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2001 K25829 - qsu:112020125 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2001 3 18240403 18244829 Tpr3g2001 3 18240403 18244829 ECH