Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1993 ATGGCTTTGAGTACAAACGGTTCTGAACAAAGTGAACTGTATCATGCTCAAATCCATTTATACAAACATGTATACAACTTTGTAAGTTCCATGGCACTCAAATCAGCTATGGAACTTGGCATAGCTGATGCAATCCATAACCATGGAAAACCAATAACTCTTCCTGAATTAGCCTCATCTTTGAAACTCCACCCTTCAAAAGTTAACATCCTATATCGATTTTTGCGATTGCTAACACACAATGGTTTCTTTGCAAAAACAACACTGAAAAACAAAGAAGGGGAAGATGAAATAGCATATTCTCTTACACCATGTTCAAAGCTTCTAGTAAGTGGCAAACCAACATGTTTATCAGCAATTGTTAAAGGAGCACTTCATCCAAGTTCTTTGGATATGTGGAGTGCCTCAAAGAAATGGTTCAATGAAGAAAAGGAACAAACACTTTATGAATGTGCAACAGGGGAGAGTTTTTGGGATTTCCTTAACAAAGATTCTGAATCTGATACTTTGAGTATGTTTCAAGATGCTATGGCTTCTGATTCTAGAATTTTTAAGATTTCTCTTCAAGAGAACAAACATGTGTTTGAGGGTTTGGAGTCTCTTGTTGATGTGGCTGGTGGAACTGGTGGTGTCACAAAACTCATTCATGAAGCTTTTCCTAACCTCAAATGTACTGTTTTTGATCAACCACAGGTTGTTGCTAACTTAACTGGAAATGAAAATTTGAAATTTGTTGGTGGTGATATGTTCAAATCCATTCCTCCTGCAGATGCTGTTTTACTCAAGTGGGTTCTTCATGATTGGAATGATGAACAATCCTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCACACAAAGGGAAAGATGGAAAAGTGATTATCATCGACATATCAATTGATGAAACAAGTGATGATCATGGATTAACTGAATTGCAATTGGACTATGACTTGGTGATGCTTACAATGTTTCTTGGTAAAGAAAGAACAAAGACAGAATGGGATAAACTCATACGTGATGCAGGTTTCAGCAGCTACAAGATATCTCCTATATCTGGTTTCAAGTCTCTCATTGAAGTTTATCCTTAA 1089 0.3636 MALSTNGSEQSELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPITLPELASSLKLHPSKVNILYRFLRLLTHNGFFAKTTLKNKEGEDEIAYSLTPCSKLLVSGKPTCLSAIVKGALHPSSLDMWSASKKWFNEEKEQTLYECATGESFWDFLNKDSESDTLSMFQDAMASDSRIFKISLQENKHVFEGLESLVDVAGGTGGVTKLIHEAFPNLKCTVFDQPQVVANLTGNENLKFVGGDMFKSIPPADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDHGLTELQLDYDLVMLTMFLGKERTKTEWDKLIRDAGFSSYKISPISGFKSLIEVYP* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1993 362 Pfam O-methyltransferase domain 133 344 IPR001077 GO:0008171
Tpr3g1993 362 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tpr3g1993 362 PANTHER O-METHYLTRANSFERASE 6 362 IPR016461 GO:0008168
Tpr3g1993 362 Gene3D Vaccinia Virus protein VP39 110 362 IPR029063 -
Tpr3g1993 362 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 6 362 - -
Tpr3g1993 362 SUPERFAMILY "Winged helix" DNA-binding domain 10 113 IPR036390 -
Tpr3g1993 362 PIRSF O-mtase 1 362 IPR016461 GO:0008168
Tpr3g1993 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 362 IPR016461 GO:0008168
Tpr3g1993 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 361 IPR029063 -
Tpr3g1993 362 Gene3D - 1 109 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1993 Tpr-Chr3 18131839 18133810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1993 28 348 Monolignol Biosynthesis Gene Families AT5G54160 33.841 3.72e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1993 K22588 - ag:AAY18581 642.114