Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1992 ATGGCTTTGAGTACAAACGGTTCTGAAGAAAGTGATCTGTATCATGCTCAAATCCATTTGTACAAACATGTATACAACTTTGTAAGTTCCATGGCACTCAAATCTGCTATGGAACTTGGCATAGCTGATGCAATCCATAACCATGGAAAACCAATAACTCTTCCTGAATTAGCCTCATCTTTGAGACTTCACCCTTCAAAAGTTAACATCCTATATCGATTTTTGCGGTTGCTAACACACAATGGTTTCTTTGCAAAAACAACAGTGAAAAGCAAAGAAGGGGAAGAAGAAATAGCATATTCTCTTACACCATCTTCAAAGCTTCTCATAAGTGGAAAATCAACATGTTTATCAGCATATATTAAAGGAGCACTTCATCAAAGTTCTATAGACATGTGGGGCTCTTCAGAGAAATGGTTCAATGAGGATAAGGAACAACCTCTGTTTGAGTGTGCAAAAGGGAAGAGCTTTTGGGATTTTCTTAACAAAGATTCTGATGCTTTGAGTATGTTTCAAGATGCTATGGCTTCTGATTCTAGAATGTTTAAGCTTGATCTTCAAGAGAACAAGCGTGTGTTTGAGGGTTTGGAGTCTCTTGTTGATGTGGCTGGCGGAACTGGTGGTGTCACAAAACTCATTCATGAAGCTTTTCCTAACATCAAATGCACTGTTTTTGATCAACCACAGGTTGTTGCTAACTTAACTGGAAATGAAAATTTGAACTTTGTTGGTGGTGATATGTTCAAAAGCATCCCTCCTGCAGATGCTGTTTTACTCAAGTGGGTTCTTCATGATTGGAATGATGAACAATCCTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCACACAAAGGGAAAGATGGAAAAGTGATTATCATTGACATATCAATTGATGAAACAAGTGATGATCATGGATTAACTGAGTTGCAATTGGACTATGACTTGGTGATGCTTACAATGTTTCTTGGTAAAGAAAGAACAAAGAAAGAATGGGATAAACTCATACGTGATGCAGGTTTCAGCAGCTACAAGATATCTCCTATATCTGGTTTCAAGTCTCTCATTGAAGTTTATCCTTAA 1083 0.3721 MALSTNGSEESDLYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPITLPELASSLRLHPSKVNILYRFLRLLTHNGFFAKTTVKSKEGEEEIAYSLTPSSKLLISGKSTCLSAYIKGALHQSSIDMWGSSEKWFNEDKEQPLFECAKGKSFWDFLNKDSDALSMFQDAMASDSRMFKLDLQENKRVFEGLESLVDVAGGTGGVTKLIHEAFPNIKCTVFDQPQVVANLTGNENLNFVGGDMFKSIPPADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDHGLTELQLDYDLVMLTMFLGKERTKKEWDKLIRDAGFSSYKISPISGFKSLIEVYP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1992 360 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tpr3g1992 360 Gene3D - 1 109 IPR036388 -
Tpr3g1992 360 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 5 360 - -
Tpr3g1992 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 359 IPR029063 -
Tpr3g1992 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 360 IPR016461 GO:0008168
Tpr3g1992 360 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Tpr3g1992 360 Pfam O-methyltransferase domain 135 342 IPR001077 GO:0008171
Tpr3g1992 360 PIRSF O-mtase 1 360 IPR016461 GO:0008168
Tpr3g1992 360 PANTHER O-METHYLTRANSFERASE 5 360 IPR016461 GO:0008168
Tpr3g1992 360 Gene3D Vaccinia Virus protein VP39 110 360 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1992 Tpr-Chr3 18126126 18127761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1992 28 346 Monolignol Biosynthesis Gene Families AT5G54160 35.135 1.22e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1992 K22588 - ag:AAY18581 626.706