Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1987 ATGCACTTCAATCATACACAACAAGTATTAGCTAGCACAAGAGCTAGGGAAGGTGTGAAAGAAGAAATCATGACATGGCGCAATGACTCAAATGAACAAGATAGGGGCATTGAAGTAATCACATCCCCCATTATTCCTAGAACAAGCAATGAAACTACTATTGTTACTCATGATGAAACAAAACAACCTCAACAAGTTCAAACCATAACTTGTCCCTCATGTGGCCATAACATTGAAGTCCAAGATCAGGGTGGAATTAATGAATTGCCTGGGTTACCAGCTGGAGTGAAATTTGATCCAAATGATCAAGAGATACTACAACACTTGGAAGCAAAAGTTTTGTTTGATGTGACAAAACTTCATCCTCTCATTGATGAGTTCATACCAACGCTTGAAGGAGTGAATGGAATCTGTTGTACACATCCAGAAAAGCTACCAGGTGTAAGAAAAGATGGACAGGTGAGGCACTTCTTTCATAGGCCATCTAAAGCATACACAACAGGAACAAGAAAAAGAAGAAAGGTTGATACTGATAAAGATGGAAGTGAGACAAGATGGCACAAAACTGGTAAAACAAGACCAGTTTTCATTGGTGGTGTTATGAAAGGTTTCAAAAAGATTCTAGTTCTCTACACTAACTATGGAAGACAAAAGAAACCTGAAAAAACCAATTGGGTGATGCATCAATACCATCTTGGTACTAATGAAGAAGAGAAAGATGGTGAATTAGTTGTTTCAAAAGTTTTCTTCCAAACACAACCTAGACAATGTGGTGGTGGTAATAATAATTCAATTATTATAAATGAAACTTATGATGAAAATGGACTTATGAGTAATCAAGGAAATGTTCAAGATGATAATGAAGTTCCTCCTCCTCCTCCTCCTATGGATTACTACAATGCTTCTCATTTCATAAATTATGAACATGTTGTTGGTCATAATTTGGAAGGTTCATCAGTGTCTCAATTTATTCCAAATATGGTTATACAAGGTGCTGATAATTCTTCCTTTATTGGATTAGCAATGGATGCAAACAAAGCAAGGTTGGAGAGAAATTAA 1059 0.3636 MHFNHTQQVLASTRAREGVKEEIMTWRNDSNEQDRGIEVITSPIIPRTSNETTIVTHDETKQPQQVQTITCPSCGHNIEVQDQGGINELPGLPAGVKFDPNDQEILQHLEAKVLFDVTKLHPLIDEFIPTLEGVNGICCTHPEKLPGVRKDGQVRHFFHRPSKAYTTGTRKRRKVDTDKDGSETRWHKTGKTRPVFIGGVMKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGTNEEEKDGELVVSKVFFQTQPRQCGGGNNNSIIINETYDENGLMSNQGNVQDDNEVPPPPPPMDYYNASHFINYEHVVGHNLEGSSVSQFIPNMVIQGADNSSFIGLAMDANKARLERN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1987 352 ProSiteProfiles NAC domain profile. 92 251 IPR003441 GO:0003677|GO:0006355
Tpr3g1987 352 Gene3D NAC domain 101 255 IPR036093 GO:0003677|GO:0006355
Tpr3g1987 352 Pfam No apical meristem (NAM) protein 93 232 IPR003441 GO:0003677|GO:0006355
Tpr3g1987 352 MobiDBLite consensus disorder prediction 169 186 - -
Tpr3g1987 352 SUPERFAMILY NAC domain 88 251 IPR036093 GO:0003677|GO:0006355
Tpr3g1987 352 MobiDBLite consensus disorder prediction 165 186 - -
Tpr3g1987 352 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 24 333 - -
Tpr3g1987 352 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 24 333 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1987 Tpr-Chr3 18043364 18046873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1987 24 259 NAC Transcription Factor Family AT4G28500 68.776 7.78e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g1987 NAM 7e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1987 3 18043364 18046873 Tpr3g1987 3 18043364 18046873 ECH
Tpr7g3018 7 37392514 37395457 Tpr3g1987 3 18043364 18046873 ECH