Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1980 ATGCGAAGGTCTCAAAAGGATATCGTAGCAGAAAATGAATTCGAAGCGAGCCTTTTGGCTAATGTTATTCCACCAAGCGAGACTGGTGTTACTTTTGACGATATTGGAGCTCTTGAAGCTGTGAAGGATACGCTGAAAGAGTTGATAATGCTTCCTTTGAAGATGCCTGAGCTTTTTCGCAAAGGGAAATTAACCAAGAGTGTCACGTCGAACACATTATCTGATGCCTGCTCTGTGGCCCCACTTAACTTGACATCCCCATGCCAGGGTATACTATTGTTTGGCCCCCCTGGAACAGGCAAAACGAAGCTTGCGAAGGCTATTGCGACTGAAGCTGGTGCAACCTTCATCAACATTTCTAATTCGAGCATTACGTCTAAGGTGCCTGGTGAAAGTGAGAAGTACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAGCTTCACCTTGTATCATATTTATCGATGAAGTTGACAGCATGCTAGGTCAAAAAGAAAAGCCAAGGGAGCATGAGACCACGCGGATAATGAGGAATGAGTTTATGGTGAATTAG 549 0.4444 MRRSQKDIVAENEFEASLLANVIPPSETGVTFDDIGALEAVKDTLKELIMLPLKMPELFRKGKLTKSVTSNTLSDACSVAPLNLTSPCQGILLFGPPGTGKTKLAKAIATEAGATFINISNSSITSKVPGESEKYVKAVFSLASKASPCIIFIDEVDSMLGQKEKPREHETTRIMRNEFMVN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1980 182 Pfam ATPase family associated with various cellular activities (AAA) 91 175 IPR003959 GO:0005524|GO:0016887
Tpr3g1980 182 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 83 182 - -
Tpr3g1980 182 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 2 67 - -
Tpr3g1980 182 Gene3D - 83 181 IPR027417 -
Tpr3g1980 182 SMART AAA_5 87 181 IPR003593 -
Tpr3g1980 182 Gene3D - 29 62 IPR027417 -
Tpr3g1980 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 179 IPR027417 -
Tpr3g1980 182 CDD AAA 90 165 - -
Tpr3g1980 182 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 67 - -
Tpr3g1980 182 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 83 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1980 Tpr-Chr3 17905027 17912330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1980 87 175 Calmodulin-binding Proteins AT3G56690 39.326 1.14e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1980 - - minc:123223545 230.72