Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1979 ATGGCTTCTAAAAATGGCTTATACAATGCAACTGAGCTTTTCCAAGCTCAAGCTCACTTGTACAAAGTCATGTACGGCTTTCTCAATCCCATGTCTGTCAAATGGGCCATTGACCTTAAAATACCAGATATCATCTACAATCATGCTCAACCCATTACTCTCTCCGAGCTTGTTTCAGCTCTTAAAGTTCCACAATCCAAACAAACTTGCGTCCAACGACTCATGCGATTATTAGCACACATTGATTTCTTTGCAATTGTCAAAATTCAAGACAACCAAGAAAGATATGCTCTTACTCCAACATCACAACTTCTTGTCTCTGGCACCGATCATTGTTTATCTTCCATGGTTCGATTTCTAAACACTCCCATTCTCGTTGATTCGTACAATCATTTGGCGAAATGGACTTCTGGGGAGGATCTCACAGTTGTTGAGACTGCTTTAGGCCCTGAAAGTTATTGGGATTTCATTCATCAAAATTCTGCATACTTGAATACTTTTAATGAGGCAATGGAAAGTGATTCTCATGTCGTGAGGTTGGCTTTGAGAGATTGTAGGTCTGTTTTTGAAGGGATTGGTTCGTTGGTCGATGTTGGTGGTGGAACTGGAAACACAGCTAAAATTATATGTGAGGCGTTTCCAGAACTCAAGTACATTGTCTTGGACCTTCCACAAGTTGTTTCTGGTTTAACAGGAAGCAATAACTTGAGTTTTGTTGGGGGAAACATGTTTAAGTCTATCCCGCAAGCTGATGCCATTATGCTCAAGTGGGTGTTACACAATTGGAGTGATGATGATTGCATAAAGATACTAAAAAATTGCAAGAATGCAATATCAAGAAAAGGGAAAGGAGGAAAAGTGATCATCATAGATGTAGTAATAAATGAAAAAGAAGATGAGCATGAAATGACAGAAGTGAAACTTTTACTTGATGTGACTATGATGACCAGTCTCAATGGAAAAGAGAGAAATGAAAAGGAATGGAAGCAACTTTTCTTACATGCTGGCTTCAAATCTTATAAGATATTCCCCGCATTTGGTTTTAGGTCTCTAATTGAGCTTTATCCGTAA 1071 0.3866 MASKNGLYNATELFQAQAHLYKVMYGFLNPMSVKWAIDLKIPDIIYNHAQPITLSELVSALKVPQSKQTCVQRLMRLLAHIDFFAIVKIQDNQERYALTPTSQLLVSGTDHCLSSMVRFLNTPILVDSYNHLAKWTSGEDLTVVETALGPESYWDFIHQNSAYLNTFNEAMESDSHVVRLALRDCRSVFEGIGSLVDVGGGTGNTAKIICEAFPELKYIVLDLPQVVSGLTGSNNLSFVGGNMFKSIPQADAIMLKWVLHNWSDDDCIKILKNCKNAISRKGKGGKVIIIDVVINEKEDEHEMTEVKLLLDVTMMTSLNGKERNEKEWKQLFLHAGFKSYKIFPAFGFRSLIELYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1979 356 Pfam O-methyltransferase domain 130 338 IPR001077 GO:0008171
Tpr3g1979 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Tpr3g1979 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 356 IPR016461 GO:0008168
Tpr3g1979 356 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 5 355 - -
Tpr3g1979 356 Gene3D Vaccinia Virus protein VP39 107 356 IPR029063 -
Tpr3g1979 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 354 IPR029063 -
Tpr3g1979 356 PANTHER O-METHYLTRANSFERASE 5 355 IPR016461 GO:0008168
Tpr3g1979 356 CDD AdoMet_MTases 195 294 - -
Tpr3g1979 356 Gene3D - 2 105 IPR036388 -
Tpr3g1979 356 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tpr3g1979 356 SUPERFAMILY "Winged helix" DNA-binding domain 11 108 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1979 Tpr-Chr3 17889387 17890864 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1979 30 354 Monolignol Biosynthesis Gene Families AT5G54160 32.635 1.25e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1979 K22588 K13262 gmx:100818947 430.254