Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1966 ATGGATTCTGAGTTCTGGACCTCTCGTCTTGCAGCTGCTAAACGCCACTATTCTCTTCAGCATAATCACCCAACTTCTCATTTAGATCGTTTGGGAATAGATGATTTTGATGTTGAAGAAGAGGTTAGACCAGATTTTCCTTGTCCGTATTGTTATGAAGAGTTTGATATAGGTTCTTTGTGTTCTCATCTTGAAGATGAACATTCATGTGAATCAAGAGTCACGATTTGTCCTGTATGCTCAGTTAAAGTTGCACGCGACATGTTGAGCCACATAACGCTGCAACACGGACATCTATTTAAGATACAGAGAAGACGCAGGTTAAGAAGAGTTGCTATTCCTAACAGTCAGACGTTGTCTCTATTGGGTCGAGATCTCCGTGAAGCTCATTTACAGGTGCTTCTTAATGGTGGTGGTGGTGGATACCGATCGCATAGTAACACAGTATCCAATGCTTCTACTGATCCATTCCTATCCTCTTTTATTTTGAATTACCCTGCATGCGAAGCAGAAGAAATCTCCAAATCTGTGGTAACAAGTGCTGAAGATTCTTCTACAAAGAACACAACAGCACCTGTACAACATATATGGAAATCAAGTTTTGATCCATCATTGAGCATTGAAGAGCGGGAGAAAAGGATGAGACAAGCTGCCGGGAGGTCTAGTTTTGTGCAGGATTTGTTTATCTCAACCTTGTTAGGCGACTAA 708 0.4138 MDSEFWTSRLAAAKRHYSLQHNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGSLCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLNGGGGGYRSHSNTVSNASTDPFLSSFILNYPACEAEEISKSVVTSAEDSSTKNTTAPVQHIWKSSFDPSLSIEEREKRMRQAAGRSSFVQDLFISTLLGD* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1966 235 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 234 IPR033347 -
Tpr3g1966 235 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 234 - -
Tpr3g1966 235 Pfam Stress-induced protein Di19, C-terminal 119 232 IPR027935 -
Tpr3g1966 235 SUPERFAMILY TRAF domain-like 46 130 - -
Tpr3g1966 235 Pfam Drought induced 19 protein (Di19), zinc-binding 45 97 IPR008598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1966 Tpr-Chr3 17720919 17724243 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g1966 Di19_C 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1966 - - gmx:100792230 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1966 3 17720919 17724243 Tpr3g1966 3 17720919 17724243 ECH