Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1959 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGAGTTCCGATACCATAGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCCGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTTGAGAGCTCAGACACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCTAAGATACAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAACTTGAAGATGGCCGTACTTTGGCCGATTATAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAGATCTTTGTGAAGACGTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTCTGATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGGTTTCTACAACAAAGTTTTCGTTTCATCGCCGAGAGAAGATATTCATTCGTACCCACCACACAACACCGTTTCAAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATTACAACATCCAAAAGGAGTCAACCCTTCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAACATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGAGGTATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACTATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGGTTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCTGATTATAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTAGAAAGTTCTGATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAATCTACTCTTCATCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 2361 0.4638 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFLQQSFRFIAERRYSFVPTTQHRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1959 786 CDD Ubl_ubiquitin 558 633 - -
Tpr3g1959 786 CDD Ubl_ubiquitin 710 785 - -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tpr3g1959 786 PANTHER UBIQUITIN 403 561 - -
Tpr3g1959 786 PANTHER UBIQUITIN 66 232 - -
Tpr3g1959 786 PANTHER UBIQUITIN 1 159 - -
Tpr3g1959 786 PANTHER UBIQUITIN 147 308 - -
Tpr3g1959 786 PANTHER UBIQUITIN 550 716 - -
Tpr3g1959 786 PANTHER UBIQUITIN 473 641 - -
Tpr3g1959 786 PANTHER UBIQUITIN 221 381 - -
Tpr3g1959 786 PANTHER UBIQUITIN 624 785 - -
Tpr3g1959 786 CDD Ubl_ubiquitin 406 481 - -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 481 557 IPR029071 -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 584 609 IPR019954 -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 709 785 IPR029071 -
Tpr3g1959 786 CDD Ubl_ubiquitin 77 152 - -
Tpr3g1959 786 SMART ubq_7 305 376 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 153 224 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 634 705 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 406 477 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 482 553 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 77 148 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 710 781 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 229 300 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 558 629 IPR000626 GO:0005515
Tpr3g1959 786 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Tpr3g1959 786 CDD Ubl_ubiquitin 229 304 - -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 432 457 IPR019954 -
Tpr3g1959 786 Gene3D - 230 304 - -
Tpr3g1959 786 Gene3D - 635 709 - -
Tpr3g1959 786 Gene3D - 558 634 - -
Tpr3g1959 786 Gene3D - 77 152 - -
Tpr3g1959 786 Gene3D - 482 557 - -
Tpr3g1959 786 Gene3D - 153 229 - -
Tpr3g1959 786 Gene3D - 1 76 - -
Tpr3g1959 786 Gene3D - 399 481 - -
Tpr3g1959 786 Gene3D - 305 389 - -
Tpr3g1959 786 Gene3D - 710 786 - -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 557 633 IPR029071 -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 229 304 IPR029071 -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 660 685 IPR019954 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr3g1959 786 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tpr3g1959 786 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tpr3g1959 786 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tpr3g1959 786 CDD Ubl_ubiquitin 634 709 - -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Tpr3g1959 786 CDD Ubl_ubiquitin 482 557 - -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 405 481 IPR029071 -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 632 709 IPR029071 -
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Tpr3g1959 786 CDD Ubl_ubiquitin 1 76 - -
Tpr3g1959 786 CDD Ubl_ubiquitin 153 228 - -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 508 533 IPR019954 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 482 557 IPR000626 GO:0005515
Tpr3g1959 786 PANTHER - 221 381 - -
Tpr3g1959 786 PANTHER - 624 785 - -
Tpr3g1959 786 PANTHER - 1 159 - -
Tpr3g1959 786 PANTHER - 473 641 - -
Tpr3g1959 786 PANTHER - 147 308 - -
Tpr3g1959 786 PANTHER - 66 232 - -
Tpr3g1959 786 PANTHER - 550 716 - -
Tpr3g1959 786 PANTHER - 403 561 - -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 406 481 IPR000626 GO:0005515
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 736 761 IPR019954 -
Tpr3g1959 786 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 558 633 IPR000626 GO:0005515
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 710 785 IPR000626 GO:0005515
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Tpr3g1959 786 CDD Ubl_ubiquitin 305 380 - -
Tpr3g1959 786 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 636 707 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 408 479 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 484 555 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 712 783 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 560 631 IPR000626 GO:0005515
Tpr3g1959 786 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Tpr3g1959 786 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr3g1959 786 ProSiteProfiles Ubiquitin domain profile. 634 709 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1959 Tpr-Chr3 17668647 17677267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1959 710 786 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.94e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1959 K08770 - csin:114305206 1452.96