Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g1948 | ATGTCCGAAATTTCACATTCAGGGTACAAGGATTATGTCGCTGGTTTACTCGCTGGAGTTTCCGCTGTAGTCACTGGTCACCCTTTTGATACCGTTAAGGTGAAGCTGCAGACGCACAACACAAAAGCACATCTAGTTCCATACAGAAATGGATTGCATTGTACTGCTAGGATATTACAGACTGAAGGAATCAAAGGATTTTATAGAGGAGCAACATCATCTTTTGCTGGGATGGCTTTGGAAGGATCTCTCTTTTTCGGCATTTATTCCCAGACAAAACAGTACCTTCAGGGTGGCGTGCAAAGCGGTGCCCCACAACCTCAAGTGGTAATACCGTCTGCAGCTTTTAGTGGTGCCATCAACAGTTTTGTGTTAGGTCCAACTGAACTGATAAAGTGTAGGATGCAGATCCAAGGCACCGACTCTTTAGTTCCCGTGTCAAGTAGATACAGTAGTCCCCTTGATTGTGCCCTTAAAACTTTAAAAACAGAAGGGGTGAAAGGAGTATTTCGTGGAAGTAGTACAACATTGCTTAGAGAATCTATAGGGAATGCTACCTTTTTCAGTGTATATGAATATATGCGTTATCGAATGCATTCATATATCAAACCTGCTTCATCCGATTACAGTCACCTGATTGAAATTGGAATTGGAGTTGTTACCGGTGGAGTTAGTGGTGTGGCCTTTTGGTTGGTAGTTATGCCCCTTGACGTGGCAAAGACACTAATTCAGACAAACCCGGATAAAAACTGTCCCAGAAACCCTTTTACGATCTTGAGTTCAATCTACAAGAGGACTGGTTTGAAGGGGTGCTATACAGGTCTCGGCCCCACGGTAGGTCGAGCATTTCCGGCTAATGCTGCAACAATTGTCACCTGGGAGCTAGCAATGAAAATGCTAGGCATTAGGCATGACTAA | 918 | 0.439 | MSEISHSGYKDYVAGLLAGVSAVVTGHPFDTVKVKLQTHNTKAHLVPYRNGLHCTARILQTEGIKGFYRGATSSFAGMALEGSLFFGIYSQTKQYLQGGVQSGAPQPQVVIPSAAFSGAINSFVLGPTELIKCRMQIQGTDSLVPVSSRYSSPLDCALKTLKTEGVKGVFRGSSTTLLRESIGNATFFSVYEYMRYRMHSYIKPASSDYSHLIEIGIGVVTGGVSGVAFWLVVMPLDVAKTLIQTNPDKNCPRNPFTILSSIYKRTGLKGCYTGLGPTVGRAFPANAATIVTWELAMKMLGIRHD* | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1948 | 305 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 105 | 197 | IPR018108 | - | |
| Tpr3g1948 | 305 | Gene3D | Mitochondrial carrier domain | 2 | 110 | IPR023395 | - | |
| Tpr3g1948 | 305 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 6 | 95 | IPR018108 | - | |
| Tpr3g1948 | 305 | Gene3D | Mitochondrial carrier domain | 111 | 305 | IPR023395 | - | |
| Tpr3g1948 | 305 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 213 | 299 | IPR018108 | - | |
| Tpr3g1948 | 305 | Pfam | Mitochondrial carrier protein | 219 | 300 | IPR018108 | - | |
| Tpr3g1948 | 305 | Pfam | Mitochondrial carrier protein | 113 | 196 | IPR018108 | - | |
| Tpr3g1948 | 305 | Pfam | Mitochondrial carrier protein | 9 | 97 | IPR018108 | - | |
| Tpr3g1948 | 305 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 132 | 304 | - | - | |
| Tpr3g1948 | 305 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 6 | 132 | - | - | |
| Tpr3g1948 | 305 | PANTHER | - | 132 | 304 | - | - | |
| Tpr3g1948 | 305 | PANTHER | - | 6 | 132 | - | - | |
| Tpr3g1948 | 305 | SUPERFAMILY | Mitochondrial carrier | 7 | 294 | IPR023395 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g1948 | Tpr-Chr3 | 17559862 | 17563818 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1948 | 25 | 300 | Antiporters | AT1G79900 | 28.369 | 8.14e-33 | 121 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g1948 | K15109 | - | gmx:100815087 | 497.278 |
Event-related genes