Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1944 ATGAAGTTTAACGTTGCGAATCCAACCACTGGATGCCAGAAGAAGCTTGAAATCGATGATGACACCAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCACAGGAAGTCCTTGGTGATGCTTTGGGCGAGGAATTTAAGGGCTATGTTTTCAAAATCACTGGTGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACACCTGGTCGTGTTCGCCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGACACGGAAGGCGTAACGGAGAGCGTAGAAGGAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAAGGTGACAATGATTTGCCAGGACTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGAAAGCTCTTCAACTTGTCAAAGGAGGATGATGTGCGAAAATATGTTAACACCTACCGTCGCACCTTTACCACCAAGGCTGGGAAAAAGGTTAGCAAAGCTCCAAAGATTCAACGTCTGGTCACTCCTTTGACACTCCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGAATTGCTAAGGCAAAATCTGAGGCAGCAGAATATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCAAAGAAGAGGTCTAGACTATCCACTGCTACAAAGCCAGTCACAGCTTAG 747 0.4685 MKFNVANPTTGCQKKLEIDDDTKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTATKPVTA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1944 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Tpr3g1944 248 Gene3D - 133 234 - -
Tpr3g1944 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 247 - -
Tpr3g1944 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tpr3g1944 248 MobiDBLite consensus disorder prediction 221 237 - -
Tpr3g1944 248 MobiDBLite consensus disorder prediction 221 248 - -
Tpr3g1944 248 Coils Coil 189 216 - -
Tpr3g1944 248 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Tpr3g1944 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tpr3g1944 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 247 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1944 Tpr-Chr3 17512668 17515190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1944 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.494 3.49e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1944 K02991 - gmx:100786559 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1944 3 17512668 17515190 Tpr2g2361 2 28454125 28456628 PCT