Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1943 ATGGCTGCTTCACCTTCTTCAGCTCTCAATTCCCTCTCTTCTCTCTCTTTCCGTTCTTCATCTTCCTCTTCTTGTTTCTCTCTTCTCCCCACTACCAACAAACTCACTTTCCCACTCCTCACTAAAACAACCCCACTCTCCCATTCCTTCACCGCCAAATCCACCTTCTTCGAAGAACAACAACAACAAGAAGAAGACCTTCCATTCGACCCACCCGAAATCCCTGAAGACTTCGTCGAACCACCTTCCATCTTCGACGAACCAGAAGAAGACGAAGACAAAATCACCGCCGCTTACGAAGAACTTTACGGCCCAGCCTACAGTGGAGTTAGTGTATTGGGAAATGACGTAAACGTGATGCAGTCAAAGGTGGGTAAGGATACGGGAATTGGGGGTACGAAGAAGAAACAGAGAGGTAAGATAAAAGATGGGTTTGAAGAAAGAGTTATTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTGTTGTTGTTATTGGTGATAAGAATGGTCAAGTTGGTGTTGGTGTTGGTAAATCTAAGGAAGTTATTTCTGCTGTTCAGAAATCTGCTATTGATGCTAGAAGGAATATTGTTACTGTTCCTATGACTAAGTACTTGACTTTTCCTCATAGAGCTGACGGAGATTTTGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCCGGTACCGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAATTGGCAGGTGTTGAAAATGCTTTGGGGAAACAAATAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTTGTTGCAGTGCTGAAAATGAAGCAGTTCAGTGAGGTCGCCGAAGAGCGTGGGTTGCCTATGGAAGAGTTATGGAAGTAA 906 0.4437 MAASPSSALNSLSSLSFRSSSSSSCFSLLPTTNKLTFPLLTKTTPLSHSFTAKSTFFEEQQQQEEDLPFDPPEIPEDFVEPPSIFDEPEEDEDKITAAYEELYGPAYSGVSVLGNDVNVMQSKVGKDTGIGGTKKKQRGKIKDGFEERVIQVRRVTKVVKGGKQMRFRAVVVIGDKNGQVGVGVGKSKEVISAVQKSAIDARRNIVTVPMTKYLTFPHRADGDFGAAKVMLRPASPGTGVIAGGAVRIVLELAGVENALGKQIGSDNALNNARATVVAVLKMKQFSEVAEERGLPMEELWK* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1943 301 Gene3D - 141 206 - -
Tpr3g1943 301 Gene3D - 212 300 IPR014721 -
Tpr3g1943 301 PANTHER RIBOSOMAL S SUBUNIT 13 301 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g1943 301 Hamap 30S ribosomal protein S5 [rpsE]. 120 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Tpr3g1943 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 215 293 IPR020568 -
Tpr3g1943 301 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g1943 301 Pfam Ribosomal protein S5, C-terminal domain 222 292 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tpr3g1943 301 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Tpr3g1943 301 SUPERFAMILY dsRNA-binding domain-like 142 210 - -
Tpr3g1943 301 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 13 301 - -
Tpr3g1943 301 TIGRFAM rpsE_bact: ribosomal protein uS5 143 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Tpr3g1943 301 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1943 145 301 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.515 9.75e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1943 K02988 - csin:114316698 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1943 3 17506699 17509509 Tpr3g1943 3 17506699 17509509 ECH