Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1936 ATGTCATTCTATAACATGTACTATAAGTATATCTCTATGCAAGAGATAACAAGATGCTCCAAACAAAATCAGGCCCGAGACATTGGTGCTATAATGGACACTGCCCCTCAAATAATTCGCGAAGGGTATTATCTTCGACACCTCGCAGGTTTTCCAAGCCAGGAGAAAGATACACTTTTGTCCTGCGATTTTTCGTCAGATGGTAAAAATGTAGCAAGTGGCGGGTTTGGGAAAAAGCCTTTCATTTGCTATCCAGAGGCTCGTAATTCTGTTTATTCATCAGACTCACATTTATCTGCCATCTTAGAAGTTAGATTTCAACCAGGATCAACTATATTTGCAACATCTTCTACGGATAAAACAGTAAAATTATGGAATGCTACAACTCCTGCAAAACCGGTGTACGAATTTAGTCATAAAGGGATAGTAAGATCATTGGACTTCCACCCAACACAAAGAATTCTTTGCTCGTCCGGTACTGATGTAGTTGAAGTGTGGAATCTTGTTCAGCGTGTTAGGACGGACCACATTATGGCAGGTGTCAGCATAGTGAGATTTCAGCCTGGATCGGGGATGCTTTTGGCAGTTGCCAATCAAAATGTTATCAACATACTTGATTTTCAGACATTTACTATTCAGAATTGTCTCCGGGGGCACGTCAAATATATTTGTTCCTTGTGTTGGGATGTCACTGGGCAAACAATCGCCTCTGTCAGTGAAGATGGTTTGCGTGTCTGGTCACTTTCTATGGGCGGACAGTGCTTATATCACTATCCATCAGAAGGGAAGATATTTCAGTCCGTTATATTTCATCCTCGATACCGTAACGTCTTAGTTGTTGGTGGTTTTCAGTGCATGGAATTGTTGATTCTTGAGTGCAATGGGCAAATTCACTGTATTCATTCCTCTAGTATATCAATTACTGGACTAGCAGCTTGTACACAAAATGAAATATTTGCATCAACTAGCAATGATTTTCTCCCTGTGGTGAACATATGGAAATGA 1005 0.405 MSFYNMYYKYISMQEITRCSKQNQARDIGAIMDTAPQIIREGYYLRHLAGFPSQEKDTLLSCDFSSDGKNVASGGFGKKPFICYPEARNSVYSSDSHLSAILEVRFQPGSTIFATSSTDKTVKLWNATTPAKPVYEFSHKGIVRSLDFHPTQRILCSSGTDVVEVWNLVQRVRTDHIMAGVSIVRFQPGSGMLLAVANQNVINILDFQTFTIQNCLRGHVKYICSLCWDVTGQTIASVSEDGLRVWSLSMGGQCLYHYPSEGKIFQSVIFHPRYRNVLVVGGFQCMELLILECNGQIHCIHSSSISITGLAACTQNEIFASTSNDFLPVVNIWK* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1936 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 129 - -
Tpr3g1936 334 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 334 IPR044716 GO:0003714
Tpr3g1936 334 SUPERFAMILY WD40 repeat-like 56 327 IPR036322 GO:0005515
Tpr3g1936 334 Gene3D - 176 334 IPR015943 GO:0005515
Tpr3g1936 334 Gene3D - 40 175 IPR015943 GO:0005515
Tpr3g1936 334 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 6 334 - -
Tpr3g1936 334 SMART WD40_4 209 247 IPR001680 GO:0005515
Tpr3g1936 334 SMART WD40_4 41 84 IPR001680 GO:0005515
Tpr3g1936 334 SMART WD40_4 293 334 IPR001680 GO:0005515
Tpr3g1936 334 SMART WD40_4 130 167 IPR001680 GO:0005515
Tpr3g1936 334 SMART WD40_4 87 126 IPR001680 GO:0005515
Tpr3g1936 334 Pfam WD domain, G-beta repeat 95 126 IPR001680 GO:0005515
Tpr3g1936 334 Pfam WD domain, G-beta repeat 132 167 IPR001680 GO:0005515
Tpr3g1936 334 Pfam WD domain, G-beta repeat 213 246 IPR001680 GO:0005515
Tpr3g1936 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 129 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1936 Tpr-Chr3 17472068 17474267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1936 13 248 U-box Gene Family AT2G33340 22.266 9.80e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1936 - - cam:101496351 373.629