Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1907 ATGATGCAAAGCCAACAAGTTATCAAAGAAGACGACGACGGTCCGCCACCCGGTTGGCAACCTATCCCCACTCCGCTACCCCCACCGCTACACCCACTTCCATCCGGTTTTGCTCAAATGGTCTGTGGTTCTTGTCGCCGCCTGCTTTCATATCCACAAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTGAAGTGTGGGAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCATCATGCCAGTTCGTGACAGAAATTGGGGAAAACAACAAGCGGCCTCCATGGTCTGTCCAACAAAATAAACCAACTCCTCCGAAAACTGGTTGTTAG 393 0.4809 MMQSQQVIKEDDDGPPPGWQPIPTPLPPPLHPLPSGFAQMVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGENNKRPPWSVQQNKPTPPKTGC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1907 130 PANTHER PROTEIN LOL2 25 126 - -
Tpr3g1907 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 77 105 IPR005735 -
Tpr3g1907 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 39 69 IPR005735 -
Tpr3g1907 130 PANTHER PROTEIN LSD1 25 126 IPR040319 -
Tpr3g1907 130 Pfam LSD1 zinc finger 42 66 IPR005735 -
Tpr3g1907 130 Pfam LSD1 zinc finger 80 104 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tpr3g1907 zf-LSD1 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1907 - - gmx:100780865 213.001