Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1905 ATGGCCTTTGAGCATGAAGACTTCATTTCACAAGATTGGAAAGCCACTAAAAATTCTGTCACAGAACCAGAGAAGAATTGTGACAGTTGTTTTGATTGCAACATCTGTTTAGATTTTGCACATGAACCAGTTGTAACACTATGTGGTCACCTTTACTGCTGGTCCTGCATCTACAAATGGCTCTTTGTGCAAAGTGCATCACTTGCACCTGATGAGCCCCCACAATGTCCAGTTTGCAAGGATGGTATATCTCACACCAAAATGGTCCCTCTTTATGGTAGGGGCCAGAGTACCTTATCTCTCCGTGATCGCGACAGGAACGGTAAAACTACCGTTCAAGATATTTCTACACCACCGAGACCATCTGCATCAGGGATTCAATCTCTATTCGCAATGGCAACATTGCCGCAAAATCAAAGTGGTCAACAACTTCCATATCGTAATCCTTATCAGAATCCGCATATTAACTCTCCTCCATACCAAGAGAATGATCATGAAACTTCTCAAATGCTCAATCTTGGTAGCTTTATGACACCAGTATTCCCTTACTATGTCTTTGGTAACTCGGAAAATTCAGGTAGCTCTAGGTGGAGAAGGCAAGAAATGCTGGCAAACAAATCATTGAACAGAATATCATTTTTTCTGTTTTTATGCTTTGTCCTTTGTTTAATCCTCTTCTGA 681 0.4112 MAFEHEDFISQDWKATKNSVTEPEKNCDSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQSTLSLRDRDRNGKTTVQDISTPPRPSASGIQSLFAMATLPQNQSGQQLPYRNPYQNPHINSPPYQENDHETSQMLNLGSFMTPVFPYYVFGNSENSGSSRWRRQEMLANKSLNRISFFLFLCFVLCLILF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1905 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr3g1905 226 MobiDBLite consensus disorder prediction 99 122 - -
Tpr3g1905 226 Pfam Zinc finger, C3HC4 type (RING finger) 33 79 IPR018957 GO:0046872
Tpr3g1905 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 226 - -
Tpr3g1905 226 CDD RING-HC_AtRMA_like 31 80 - -
Tpr3g1905 226 SMART ring_2 33 79 IPR001841 -
Tpr3g1905 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 116 IPR013083 -
Tpr3g1905 226 SUPERFAMILY RING/U-box 27 92 - -
Tpr3g1905 226 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Tpr3g1905 226 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1905 Tpr-Chr3 17222559 17224483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1905 8 212 C3H Transcription Factor Family AT4G27470 37.500 1.98e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1905 K10666 - gmx:100779793 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1905 3 17222559 17224483 Tpr2g2440 2 29331668 29333602 PCT