Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1897 ATGTACGTGGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTTCTTCAAGCTGATATCCAACACGCCAATACTCTGGCGTCGGATTTTCCTAGGGAGTATGATGGTGCATCCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTGTTTTTTGTTCAATGGACAGATTGTCATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACTACCACCATGTCTACCCATGAAAGAAAAGCAAGCATAAGGGAATTCTATGCTGTTATTTATCCCTCTTTATTGCAACTTGAGAAAGGTGTCACTGATTCTGAGGATAAAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGAGGACTATAGGCAATCTTCTGATGTAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCCAACTGTAATCATGCTATGTGCCTGAAATGCTACCGAGAATGGCGAACAAGATCACAGTCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTTAACTCAGGGGATCTCTGGGTATTTACTGATAGAAGGGATGTGGTTGATATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTGTGATTGTTCCAGACTCTCTCTTTGACACTTATGACTCTCACATAAGGTAA 744 0.4153 MYVASMRKSFKDSLKLLQADIQHANTLASDFPREYDGASLQMRMSYSPAAHLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDEDYRQSSDVDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPVIVPDSLFDTYDSHIR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1897 247 SMART ring_2 151 188 IPR001841 -
Tpr3g1897 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Tpr3g1897 247 SUPERFAMILY RING/U-box 140 194 - -
Tpr3g1897 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 4 247 - -
Tpr3g1897 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Tpr3g1897 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Tpr3g1897 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Tpr3g1897 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1897 Tpr-Chr3 17160262 17164243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1897 149 205 C3H Transcription Factor Family AT5G01960 38.596 4.35e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1897 K25840 - gmx:100777318 476.092