Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1857 ATGGGAGCGGAAGTGATTGTGAATTGGGGTACGTGGGAGGAGCTTCTTCTTGGTGGTGCTGTTCTCCGACACGGCACTCGTGATTGGTCCGTCGTCGCTGCTGAACTCCGAGCTCGAACCCTTTCTCCATACGCTATCACACCCGAGGTTTGTAAAGCCAAATATGAAGACATACAACAGCGCTATTCAGGGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGAGTAGAAGAGCTTAAGAGAGCTTTGGAGAAATCCGAAAATTCAATTGGGTCTCTTCAATCAAGGCTTGAATCCCTTAAAGCTGACAAGAACGAGAAAAGAGATGATTGTCATGTTGAAAACGACTCAGTTGAACCAGAATTACGCGTTCCTTCACAGAAATTGGAGAGAGTCGAATCTTCCACCAAAGAGACGTCAAAGGACGGGCTCTCTGCTGGGAGTTTTACACATCAAACCGAGACAAACTGGTCTCATGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCAGGTGTTTCAGGGTCTACTGAACATGAGAAAGTTCTGAATGTAGATAAGTTGGCAGATACTGTATATGAAGGACAGGGAGGGTGTTGTAAAAAACGGAGAGGGAAGAGAAAGAGGAAGGATTGTAGCAGAAATATTAATGAAGCGAGTGTAAGAGAAAGTGATTTTTCAATTGATGTGTCCAGGTTGAAAGAAAGTTCTACCAGTAACTGTGGCGAGGTTGTTAAATCTTCTGGTATAACTGAGGAGAATACGAACTTGAAAAAGGATGAAATGAAAGATATGATGGAGATTTTAGATTCTGTTATGGAAATTAAAGGCGCTTCTTGCTTTACTCGCAAGCATGATAGCCAGAAGCGAGCAAGGTACAGGCAGTTAATCCGAAGACACATGGACTTCGACACTATAAGGTCAAGCATTAGCAACAAAAAAATTAATTCAAAGATAGAACTTTTCAGAGACATGCTTCTACTGGCCAACAATGCTTTGATTTTCTACTCCAAGAACACTCGTCAATATAAATCTGCGCTACTCATGAGAGAAATTGTCACTGAAAAACTGAGGGAGAATGGCACGGTTTGCACTAAGAGTGACATACATGCACTGAGGGAGATTGGCACGGTTTGCACTAAGAGTGACATACATGCTGATGTCGACTCTAACTCTATGGTATTACCTGTTCAAGATCCTCCTGTGAAAGTCAGAAGTGTTCGTTCCGGTAACCGAAAGATCGATGTTGCAGAGACAGCTGATGTAAGCAATCCTGTTTCTGGGCTTTCACATGTAGCCAAGAAGAAGCCTAGTAGTAGTAAAGAGGATTCTCCATCTTCAGCGAAACCCTTACACATCAAGAAAGCTTTTGGTGGACCTAAAAAAATTGAACCTGCAACTCCAACTCCAACGAAGGAAACAAAGGAAAAGAAAAGAAGAAGATTTGGCTCCTAA 1464 0.4262 MGAEVIVNWGTWEELLLGGAVLRHGTRDWSVVAAELRARTLSPYAITPEVCKAKYEDIQQRYSGAWFEELKKKRVEELKRALEKSENSIGSLQSRLESLKADKNEKRDDCHVENDSVEPELRVPSQKLERVESSTKETSKDGLSAGSFTHQTETNWSHECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLADTVYEGQGGCCKKRRGKRKRKDCSRNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGITEENTNLKKDEMKDMMEILDSVMEIKGASCFTRKHDSQKRARYRQLIRRHMDFDTIRSSISNKKINSKIELFRDMLLLANNALIFYSKNTRQYKSALLMREIVTEKLRENGTVCTKSDIHALREIGTVCTKSDIHADVDSNSMVLPVQDPPVKVRSVRSGNRKIDVAETADVSNPVSGLSHVAKKKPSSSKEDSPSSAKPLHIKKAFGGPKKIEPATPTPTKETKEKKRRRFGS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1857 487 ProSiteProfiles Bromodomain profile. 284 346 IPR001487 GO:0005515
Tpr3g1857 487 MobiDBLite consensus disorder prediction 100 148 - -
Tpr3g1857 487 PANTHER BROMODOMAIN PROTEIN 1 484 - -
Tpr3g1857 487 Gene3D - 255 373 IPR036427 GO:0005515
Tpr3g1857 487 MobiDBLite consensus disorder prediction 418 487 - -
Tpr3g1857 487 SMART bromo_6 261 365 IPR001487 GO:0005515
Tpr3g1857 487 MobiDBLite consensus disorder prediction 100 137 - -
Tpr3g1857 487 CDD Bromodomain 264 360 - -
Tpr3g1857 487 Pfam Bromodomain 269 349 IPR001487 GO:0005515
Tpr3g1857 487 Coils Coil 68 109 - -
Tpr3g1857 487 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 484 - -
Tpr3g1857 487 MobiDBLite consensus disorder prediction 471 487 - -
Tpr3g1857 487 SUPERFAMILY Bromodomain 256 362 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1857 Tpr-Chr3 16749671 16754792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr3g1857 Bromodomain 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1857 - - gmx:100804245 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1857 3 16749671 16754792 Tpr2g2401 2 28900380 28906937 PCT