Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1846 ATGAACGACCTGTTTTCGAATTCCTTCAAAAAATACACTGATTTGAAGGAACAAACCTACAATGATGATGTCGAGGCAGGGAACAAAGAAAGTGTCAATCTCGATAAATTCTTTGAAGATGTCGAGAATATAAAAGAAGACATGAAATCAATTGAAGTATTGTTTAAGAAATTGCAAGAGGCTAATGGAGAAAGCAAAACAGTGCACAATGCTAAAACCATGAAAGAACTTCGAGCACGGATGGACAAAGATGTTGAACAAGTCCTTAAACGCGTCAAAGTAATTAAAGGAAAACTTGAAGCATTGGATCGTTCCAATGCGGCTAATAGAAACATTCCAGGGTGTGGTCCAGGTTCATCAGCAGATAGAACTAGAACGTCGGTTGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATAGTTTTCAAGGGTTGAGAGCAAAAATGCACTCCGAGTATAAGGAAACGGTGGAACGTAGATATTTTACAATAACGGGGGAGAAGGCGGACGAAGAAACTATAGACAATTTAATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAAGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATTCTGTTAAGGAAATAGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGGCAACATCTTAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTCAAGAAGCTAGAGAGACTCAAAAGGATTCTAGGAAGTGGACATGTTATGCCATACTTCTTGGTATTGTTCTTGTTATTGTGCTCTTGTTTCCTCTCCTGATGTCACTTTTACCTCATTTGTTAAGAAGATGA 921 0.3768 MNDLFSNSFKKYTDLKEQTYNDDVEAGNKESVNLDKFFEDVENIKEDMKSIEVLFKKLQEANGESKTVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALDRSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDSFQGLRAKMHSEYKETVERRYFTITGEKADEETIDNLISSGESENFMQKAIQEQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLQEARETQKDSRKWTCYAILLGIVLVIVLLFPLLMSLLPHLLRR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1846 306 CDD SynN 34 191 IPR006011 GO:0016020
Tpr3g1846 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Tpr3g1846 306 Coils Coil 41 61 - -
Tpr3g1846 306 Gene3D - 34 161 - -
Tpr3g1846 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Tpr3g1846 306 PANTHER SYNTAXIN-124-RELATED 6 296 - -
Tpr3g1846 306 CDD SNARE_syntaxin1-like 203 265 - -
Tpr3g1846 306 Pfam SNARE domain 242 292 IPR000727 -
Tpr3g1846 306 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr3g1846 306 PANTHER SYNTAXIN 6 296 IPR045242 -
Tpr3g1846 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Tpr3g1846 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Tpr3g1846 306 Gene3D - 192 296 - -
Tpr3g1846 306 SMART tSNARE_6 199 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1846 Tpr-Chr3 16655695 16656615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1846 1 304 SNARE and Associated Proteins AT1G61290 77.632 3.16e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1846 K08486 - gmx:100818999 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1846 3 16655695 16656615 Tpr2g2385 2 28754582 28756067 PCT