Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1832 ATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGATTCAACTTGGTTGTTTGGTCATGTTTAA 696 0.3822 MGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVDSTWLFGHV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1832 231 CDD RPA1_DBD_A_like 43 129 - -
Tpr3g1832 231 PANTHER REPLICATION FACTOR A 1, RFA1 29 210 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g1832 231 SUPERFAMILY Nucleic acid-binding proteins 27 130 IPR012340 -
Tpr3g1832 231 Pfam Domain of unknown function DUF223 65 158 IPR003871 -
Tpr3g1832 231 Gene3D - 27 131 IPR012340 -
Tpr3g1832 231 PANTHER BNAC01G35430D PROTEIN 29 210 - -
Tpr3g1832 231 SUPERFAMILY Nucleic acid-binding proteins 142 210 IPR012340 -
Tpr3g1832 231 Gene3D - 135 220 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1832 Tpr-Chr3 16460582 16480204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1832 23 171 Core DNA Replication Machinery Family AT5G08020 25.658 1.32e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1832 - - mtr:MTR_8g062030 224.557