Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1828 ATGCGCAATTTCAATTTCTTCCAACGTTTCTCTAGAACCTTCCGCGACTATGACTCTCAGTTCAAGCTCGTTCTTCTCTGCACCACCGTAAGTGGTGGTGGTCTTTTGGCTTACGGTGAGGCTGTTGCTACATCTGAAGCAGCGGTACCTGAGAAGAAAAAGGTGTTGGTGCTGGGAACTGGTTGGGCAGGAACAAGTTTCCTGAGGAATCTCAATGATCCTCGATATGAGGTTCACGTTGTGTCTCCTCGGAATTACTTTGCGTTCACTCCTCTGTTGCCTAGTGTTACATGTGGCACCGTTGAGGCTCGTAGCATTGTTGAACCTGTTCGCAATATCTTCAGGAAGAAACATGTGGACTCTCGATTCAGTGAAGCAGAATGTATCAAGATTGATGCAGTAAACAGAAAAGTTTACTGTCGATCTAATATAAACAACAATTCAAATGAAAAACAAGACTTTGTCGTGGACTATGACTACTTAATCATTGCTGTGGGAGCACAGGTCAACACATTTAATACTCCCGGAGTCACGGAGCATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAAAAGATTAGAAGAACTGTAATTGACTGCTTTGAGAGAGCAAGTTTGCCAAGTGTAAGTGATGAAGAGAAAAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCTGCACTTCATGATTTCGTTAGTGAGGATTTGGTCAAATTATATCCTGGGGTAAAAGATTTAGTTAAAATTACGCTTCTGGAAGCTGGAGGTCATATCTTGAGCATGTTTGACAAAAGAATAACAGCTTTTGCTGAAGACAAATTCCAAAGAGATGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGGTATCTGACAGAGAAATTTCCACTAAAGAAATGAAAAATGGAGGAGAAATTACTTCAATTCCATATGGAATGGCTGTCTGGTCAACCGGTATTGGCACTCGTCCATTCATAAAAGATTTTATGACACAAATTGGTCAGATTAACAGACGTGCCGTAGCTACTGATGAATGGTTGAGAGTCGAGGGAACCAACAATGTATATGCGCTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGACTGATAAAGACAACTCGGGAACACTTACGCTCAAAGAATTTCAGGAGGTGATGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTAAAGAATAAACATATGCATGGCATTGCTGATCTTTTGAAGGAATCCAAGGGAGATGTTGCAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACTGCACTTATCAATGTGGACTCAGAGATGAAATTTCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGTGCCTACCTAGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTATTAGGTTCAGGGAAGAAGGGCGTCATCGCTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTCTGGGAGGAGAGCAGACAGCTGCACAGCTACCTGGAGATTGGGTTTCGATTGGACACAGCAGTCAGTGGCTGTGGTATTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGGGCATTAGTGGTGTCTGACTGGATGAGACGATTTATTTTTGGGAGGGACTCGAGTCAAATCTGA 1737 0.4243 MRNFNFFQRFSRTFRDYDSQFKLVLLCTTVSGGGLLAYGEAVATSEAAVPEKKKVLVLGTGWAGTSFLRNLNDPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKHVDSRFSEAECIKIDAVNRKVYCRSNINNNSNEKQDFVVDYDYLIIAVGAQVNTFNTPGVTEHCHFLKEVEDAQKIRRTVIDCFERASLPSVSDEEKKRILHFAIVGGGPTGVEFAAALHDFVSEDLVKLYPGVKDLVKITLLEAGGHILSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVSDREISTKEMKNGGEITSIPYGMAVWSTGIGTRPFIKDFMTQIGQINRRAVATDEWLRVEGTNNVYALGDCATINQRKVMEDIAAIFKKTDKDNSGTLTLKEFQEVMDDICERYPQVELYLKNKHMHGIADLLKESKGDVAKESIELNIEELKTALINVDSEMKFLPATAQVASQQGAYLAKCFNRMEECEKNPEGPIRFREEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWMRRFIFGRDSSQI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1828 578 SMART efh_1 380 408 IPR002048 GO:0005509
Tpr3g1828 578 PANTHER NAD(P)H DEHYDROGENASE B2 4 578 - -
Tpr3g1828 578 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
Tpr3g1828 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Tpr3g1828 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Tpr3g1828 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Tpr3g1828 578 Gene3D - 420 577 - -
Tpr3g1828 578 Gene3D - 43 414 - -
Tpr3g1828 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Tpr3g1828 578 PANTHER NADH DEHYDROGENASE 4 578 IPR045024 GO:0003954|GO:0006116
Tpr3g1828 578 Coils Coil 440 460 - -
Tpr3g1828 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Tpr3g1828 578 SUPERFAMILY EF-hand 370 424 IPR011992 -
Tpr3g1828 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Tpr3g1828 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1828 Tpr-Chr3 16427012 16431878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1828 1 578 EF-hand Containing Proteins AT4G05020 70.787 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1828 K03885 - gmx:100809915 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1828 3 16427012 16431878 Tpr2g2374 2 28596956 28603317 PCT