Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1822 ATGGGAAGAGCACCTTGTTGTGAAAAGAATGGTCTTAAGAGAGGACCATGGACACCAGAGGAAGATCAAAAACTCACTGATTACATTCATAAACATGGTTATGGTAACTGGAGATTACTCCCAAAGAATGCTGGATTACAAAGGTGTGGAAAGAGTTGTCGTCTGCGTTGGACAAACTATCTTCGACCAGATATAAAGCGAGGACGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAGCTACATAGCATTCTCGGCAACAAGTGGTCTGCAATTGCTTCTAGGCTACCAGGAAGAACGGACAATGAAATCAAGAATTACTGGAACACTCACATTAGGAAAAGATTATTAAGAATGGGAATTGATCCTGTGACACATAATCCAAGACTTGATCTTTTGGACTTTTCTTCTATTCTAAACTCATCTCTATCTCAAATGAACATTCAAAAGCTAATTGGTACACAACAATTAGTGAACCCTCATGAGATTCTAAAGTTTGCTTCATCACTCTTTTCCTCTCAAAATGGACAAGAGAATCTCCAAAATCAACAATATCAAGAAGCTTGCAACATGTGGTTGAATAATCCAACTTGTGATAATTCAATGCCTTTCACTCAAACACACTTGGTTGAATCAAATGAGAATCTATACTCATCATTTTTACCTGAATTTGGCTTCCAACAACAACATGAACATGTTCAATTAAGTGATTTAAATTTGCATTGGAATGGAATTGCTTCAAGTACTATAACAGAGAATTTTGTTCATCAGTTACCAAGCTATGATTACTTAAGTTCTGATTTTCATGGAAATGGTCTAATTATGGATCCTTACGTATTAGAAACCTCAAACTTTCATTCCAATAATAACAACCAGAATTTCAACTTCGCTTCGGTTCTATCTACGCCTTCATCGAGTACCACACCGTTGCATTCGAATTCGACGAATATCAATGGAAGCAGTATCACTGAAGATGAGACAGAGAGCTATGTTAGCAGCAATATGTTTCAATTTCAAATCTCAGATATCTTAGGTGTGAATGAGTTCATGCAGTAA 1056 0.3646 MGRAPCCEKNGLKRGPWTPEEDQKLTDYIHKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDFSSILNSSLSQMNIQKLIGTQQLVNPHEILKFASSLFSSQNGQENLQNQQYQEACNMWLNNPTCDNSMPFTQTHLVESNENLYSSFLPEFGFQQQHEHVQLSDLNLHWNGIASSTITENFVHQLPSYDYLSSDFHGNGLIMDPYVLETSNFHSNNNNQNFNFASVLSTPSSSTTPLHSNSTNINGSSITEDETESYVSSNMFQFQISDILGVNEFMQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1822 351 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g1822 351 CDD SANT 69 112 IPR001005 -
Tpr3g1822 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr3g1822 351 CDD SANT 16 61 IPR001005 -
Tpr3g1822 351 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr3g1822 351 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g1822 351 PANTHER TRANSCRIPTION FACTOR MYB41 1 344 - -
Tpr3g1822 351 Gene3D - 14 66 - -
Tpr3g1822 351 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr3g1822 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g1822 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 344 - -
Tpr3g1822 351 SMART sant 13 63 IPR001005 -
Tpr3g1822 351 SMART sant 66 114 IPR001005 -
Tpr3g1822 351 Gene3D - 69 116 - -
Tpr3g1822 351 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1822 Tpr-Chr3 16326971 16328599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1822 1 350 MYB Transcription Factor Family AT4G21440 54.450 1.09e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g1822 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1822 K09422 - gmx:100810143 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1822 3 16326971 16328599 Tpr2g2371 2 28572814 28574576 PCT