Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1820 ATGGCGAGAAAATCCTCATCGGCGAATGAAGAGATTCTACCGGACGAATTGCGGTGCGGACGAACTGACGGGAAACAATGGCGGTGCAAGAGGAGAGTGATGGATAGTCTCAAACTCTGCGAGATTCACTATCTTCAAGGTAAGCATCGTCAATATCGAGAGAAAGTTCCTGAATCTCTGAAGCTTCAGAGAAAGCGTAAGAACAACGATGAAGCTACAGAAACTGTTGTAGTCGATAATGCGGAAGCTACAGCACCGAGGGAGCTGAATATGGAGCTGAGGAAGAACAAGAAGAAGAAGGTGAAGCTCGCAGAGAGTTCGGAATCGGTTACGGTAACCGATTCAGCTTCGGGTTCTGGTTCTGTTCCGGTTAGGAAGAAGACAATTAAGCAATGTGATTCGCAATTGGATCTTATAAGAATGGTTTTGGAAAGAGAAGTTGAGAAGAGAAAAAAGAACAATAATGAGAATAAGAAGAATAAGAAAAAGAAGAAGAAGAAAAAAGAGATGAAAGTAGAAGAAGTTGAATTCAATGAAGGAGAATTAAGGAGAGAGTTACCAAATGGTGTTATGGAAATATCACCAGCTTCAACACCTCATGATTATAACAATGTGAGTTCTCATTGTGATGTGAAAGTTGGTGTTGATCATAATAGGGTTGTAGCTGTAACACCGCGAAACTTCAGGTCCAAGAATGTTGATAGGGTTGCTCTTGGAAAGTTGCAAGTTGTGCCTTATGGACCAAGCTTGAAGAAGGTGAATACTAAGAGGAAGTGTCACTTGTGCCAGAGAAGTGAATCGGTCAATCTCGTCCAGTGTTCTAGCTGTAACAAGGAGTTTTTCTGCTATGATTGCATTAGAGAGCGGTATCTTGACACTAGAAAAGAAGTTAAGAAGGCGTGCCCAGTTTGTCAAGGAACTTGCACTTGTAAGGTCTGCTTGGCAGACCAATGTAACGACAGTGAAAGTAAGGTCTGGCATCAAACATTTGTGCTTTTCTACTTGACCAATGTTTTGTTAATAGCATATTCTGACACCTCCGTTTTTGCCCTGTTGTTTCAGTCCTATTTATCTGGTAAAAGTAGAGTTGATAGAATACTCCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAATAAGTGAAAACCTAGAAACTGAGCTAGAAACAGAAGCAAAAATCAAAGGGAAAAATATTTCTGATATTCAAATCAATCAGGTTGAATTTGGTTACAATGAAATTATTTATTGCAATCACTGCAATACACCCATCCTGGATCTCCATAGACGTTGTTCTAATTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATCATCTCAAGGAAGAACTTCCGGAGAAATTAACTCATCAATGTTGAAGCTACCTGATCAAAGGAAAGCTTGTGTTGACAGCGAGGGCCATATTTTGGATCAGAAGGACATTTCTTGTGGCAATTTAACTCCTACTTTAACATTGCCTGAGGAGACAAATTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGTTAACATTGCCTGAGGAGACAAGTTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGTTAACATTGCCTGAGGAGACAAGTTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGCTAACATTGCCTGAGGAGACAAGTTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGTTAACATTGCCTGAGGAGACAAGTTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGTTAACATTGCCCGAGGAGACAAGTTGTAATGATATTGAAAAAGTGGCATGCCCTCCTAAGTTAACATTGCCTGAGGAGACAAGTTGTAATGATATTGAAAAAGTGTCATGCCCTCCTACGGAACTTGGTGGTTGTGGTACAGGCCTGCTAGATTTAAGATGCATTTCTCCCATGACTTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACATTCCTGACACTTCGGATAAAAGTTCAAGCTGCTCGCTGTGTTTTGACACCGACCTTAATAGTAACCGATATAACCAGTTGCAGAAAGCAGCTGAGAGAGAAGATCCATCAGATAATTGCTTGTTCTGTCCCACAGTTTTGGACATCAATGGTAGTAACTTTGAGCACTTTCAGAAACACTGGGGAAAGGGCCATCCTATAGTGGTTCAAGATGTGCTCCAGAGTACATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAAGTACGAGAATAATAAAGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAGTATTTTACTGGATCTCTCAAATGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTGAAGGGATGGCTGTCTTCCCAAGTATTCAAAGAGGAGTTTCCAGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCACGTCTGGTCCTCTGAATTTAGCTGCAAAGTTGCAACACGGGAGTGTGAAACATGACATTGGGCCATATGTCTATATTTCGTATGGTTGTGCTGACATAGAAGCTGATTCTGTGACAAAACTCTGCTGCGACTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAAATAAGAAAATTGCTGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGATACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGACATTATCACATGCCGAAGAAATGGAACAAAAAGGTTTGCCGAGTATGGGGAAAGAAGGAATGGAGTTTTTTAGGAGAGTCGATAGAACGTCTTGCATCTCCTCAACTGGAGCCAAAAAAGCTTCTACCCAGAGTATAGACAACAATATTTCCCAGGATGGAGAGCGCGGCATCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTATAAGAAAAAGTTTCCTGAGCATTCAGGCGCTCAGTGGGATGTCTTTCGTAGACAAGATGTACCAAAACTCATAGAATATATTAAACGACACTGTGATGAACTTACTTATACCCATGACTCTCACAAGATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTGGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACTGAGTGTATCCAGTTGATCGATGAGCTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTACACAGTATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATGCCAAACATAA 3567 0.4076 MARKSSSANEEILPDELRCGRTDGKQWRCKRRVMDSLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNNDEATETVVVDNAEATAPRELNMELRKNKKKKVKLAESSESVTVTDSASGSGSVPVRKKTIKQCDSQLDLIRMVLEREVEKRKKNNNENKKNKKKKKKKKEMKVEEVEFNEGELRRELPNGVMEISPASTPHDYNNVSSHCDVKVGVDHNRVVAVTPRNFRSKNVDRVALGKLQVVPYGPSLKKVNTKRKCHLCQRSESVNLVQCSSCNKEFFCYDCIRERYLDTRKEVKKACPVCQGTCTCKVCLADQCNDSESKVWHQTFVLFYLTNVLLIAYSDTSVFALLFQSYLSGKSRVDRILHFHYLICMLLPVLKRISENLETELETEAKIKGKNISDIQINQVEFGYNEIIYCNHCNTPILDLHRRCSNCSYSLCLSCCEKSSQGRTSGEINSSMLKLPDQRKACVDSEGHILDQKDISCGNLTPTLTLPEETNCNDIEKVSCPPTLTLPEETSCNDIEKVSCPPTLTLPEETSCNDIEKVSCPPTLTLPEETSCNDIEKVSCPPTLTLPEETSCNDIEKVSCPPTLTLPEETSCNDIEKVACPPKLTLPEETSCNDIEKVSCPPTELGGCGTGLLDLRCISPMTLLKEMEVKAEEIVCSYDIPDTSDKSSSCSLCFDTDLNSNRYNQLQKAAEREDPSDNCLFCPTVLDINGSNFEHFQKHWGKGHPIVVQDVLQSTSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKCRPQRNTWHEMLKLKGWLSSQVFKEEFPAHFSEVIDALPVQEYMNPTSGPLNLAAKLQHGSVKHDIGPYVYISYGCADIEADSVTKLCCDSYDVVNIMTHSADVPLSTEQLTKIRKLLKKHKALCQVESVDTEQLPEQEVKGMTLSHAEEMEQKGLPSMGKEGMEFFRRVDRTSCISSTGAKKASTQSIDNNISQDGERGIFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDVPKLIEYIKRHCDELTYTHDSHKMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCGVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCQT* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1820 1188 Pfam JmjC domain, hydroxylase 1038 1126 IPR003347 -
Tpr3g1820 1188 Coils Coil 144 178 - -
Tpr3g1820 1188 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 1004 1029 - -
Tpr3g1820 1188 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1187 IPR045109 GO:0032454|GO:0033169
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 97 124 - -
Tpr3g1820 1188 ProSiteProfiles JmjC domain profile. 842 1151 IPR003347 -
Tpr3g1820 1188 SMART cupin_9 823 1151 IPR003347 -
Tpr3g1820 1188 Pfam WRC 14 55 IPR014977 -
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 106 124 - -
Tpr3g1820 1188 PANTHER PROTEIN B160 9 1187 - -
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 974 997 - -
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 149 172 - -
Tpr3g1820 1188 SUPERFAMILY Clavaminate synthase-like 717 1178 - -
Tpr3g1820 1188 Gene3D Cupin 712 1160 - -
Tpr3g1820 1188 MobiDBLite consensus disorder prediction 974 1033 - -
Tpr3g1820 1188 ProSiteProfiles Zinc finger RING-type profile. 259 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1820 Tpr-Chr3 16304312 16310316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1820 8 50 GRF Transcription Factor Family AT4G37740 46.512 6.16e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr3g1820 JmjC 6.9e-09 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1820 3 16304312 16310316 Tpr2g2369 2 28546312 28551893 PCT