Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1819 ATGGCGTCGTCACTACCACACTTAGACGACGATTCCGTCTCCCCTTCCCCCCGCTCCGATCACTTCCACGACGCATCTCCACGTGTCCGCTTCATGTGCAGTTTCGGCGGTAAAATCCTCCCTCGTCCCTCCGACAATCAGCTCCGTTACGTCGGCGGCGACACCCGAATCGTCGCCGTTAACCGTTCCATTTCATTCTCCGCTCTTGTCCATAAACTCTCTAAACTCTCCGGCATGACCAACATAACAGCAAAGTACCAACTTCCAAATGAAGACTTAGACGCGTTGATTACAGTAACAACAGACGAAGATGTAGATAACATGATAGACGAATACGACCGCGTTTCACAGAATGAAAACCCACGTGCGGCTCGGCTAAGACTTTTTCTTTTCCCAGAAGGTGAAGATTCTCGAACCAATAGTATTAGCTCACTCTTAAACGGCTCAACTAAAAGAGAAAATTGGTTTATGGATGCTTTAAACGGTGGCGTTTCGGGACTTGAACGAGGTCGTTCAGAAGCTTCTTCTATGGTTTCTGAAGTACCCGATTATTTATTCGGGTTGGATAATAACTCTGAAGAAACTCAACAACAGAATAATCGAGAATTATTACGACCTAAAGAACGAAACGTTCTTCAACAATTAGATAATGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCTCCGTTTTGTTCTACTTCATCTGCGTCTATACCGAATCTTCCACCGGTTAAAACTAAACCCGAAAACCCGGTTTATGAACCGGATTTTAAAACAAGTCAAATTGAAACTGAAACGGTTTTGCAACCACAAATGAAATTGGGTAATTATCAAATTAACCCTGCAGTTCACTACCCTCCTCACTCTCAAGTTCAACCACAAGAAGTTGCTTATTCGGGTCATCATGGACAACCGGTTCCGGTTTATTATATTCAAGGTTCGGTTCAACCCGGGAATGTGCCGGTTCAGCAGGTTCATATGCAAGGACATTATCCTCCCTATGTTCAACAACCGTATCATGCGGTTATGCAAGCTCAGGTTCCAATTGGGTATCATCATATGGTTCCGGGTTCGGGTCAAGTGTATGGGGCGGGTATGAGGCATATGGCTCCGGTGCAGCCCTACAGTCCTACCGCGGTGGTTCACGACGGTTTAAAACAGCAAGTGTATCAAGGTGTGCAGAACCCAGGTCCCGTTCCGGTTTACCAGGCGATGCCCCCGGTGACAGGTGGGGATGAACAGCAGAGAGGTGGAGCGGGTCGGGGCACCAACTCGCCGCATAATTGA 1299 0.4719 MASSLPHLDDDSVSPSPRSDHFHDASPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMTNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVSQNENPRAARLRLFLFPEGEDSRTNSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNNSEETQQQNNRELLRPKERNVLQQLDNVSNSDPGSPAPVVSSPFCSTSSASIPNLPPVKTKPENPVYEPDFKTSQIETETVLQPQMKLGNYQINPAVHYPPHSQVQPQEVAYSGHHGQPVPVYYIQGSVQPGNVPVQQVHMQGHYPPYVQQPYHAVMQAQVPIGYHHMVPGSGQVYGAGMRHMAPVQPYSPTAVVHDGLKQQVYQGVQNPGPVPVYQAMPPVTGGDEQQRGGAGRGTNSPHN* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1819 432 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Tpr3g1819 432 Gene3D - 49 132 - -
Tpr3g1819 432 SUPERFAMILY CAD & PB1 domains 44 140 - -
Tpr3g1819 432 SMART PB1_new 43 131 IPR000270 GO:0005515
Tpr3g1819 432 MobiDBLite consensus disorder prediction 410 432 - -
Tpr3g1819 432 PANTHER OS05G0427100 PROTEIN-RELATED 5 426 - -
Tpr3g1819 432 MobiDBLite consensus disorder prediction 1 23 - -
Tpr3g1819 432 CDD PB1_UP2 32 131 - -
Tpr3g1819 432 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1819 Tpr-Chr3 16292703 16296062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1819 18 175 MAP Kinase Kinase Kinase AT3G46920 38.994 2.54e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1819 - - aprc:113858359 601.282