Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1808 ATGGCTTCTCATCTCCCTGACCACTTCAAATGTCCAATTTCTCTCGAAATAATGTCTGACCCTGTTATCCTCTCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGGTGGCTAGATGAAGGTCATAGAACTTGTCCAATTACCAAATTACCCCTCCCTGCTAATCCTACTCTCATCCCTAATCACGCTCTTCGCAGCTTAATCTCTACCTACACTCTCCTTCCACCACTTCACCAAATCATTTCCCAACCTGAAACCCTAATTTCAATTTTAAAATCTTCTTCTTCTTCCTCCGATTCCAAAATCGACTCGCTCCGTCAACTCGCTCGTCTTTCTAAACGCGACGCCAATTTCCGTCGCCGTCTTGTTGATTCCGGTGCTGTCTCCGCCGTTCTTTTCTGTCTTGATTCTTCTTCCGGTGAAACTAAGTTGCAGGAGAAGGCTTTATCTGTTCTTCTTAATCTTAGTCTCGATGATGATAGTAAGATTGGACTTGTTGCCGAAGGTGCAATTGATCGTGTTGTTGCGTTTCTTCTCCGGGAAGCTTCGTCAGATTGTTGTGCCCTCGCCGCGACGATAATTACTAGTCTTGCTGTTGTGGAAGTGAATAAGGGGACTATTGGAGCTTTTCCTGGAGCAATTGAAGCTCTGGTGGGAATTCTGAAAGATGGGAAGGGGAGAGAGAGGAAAGAAGCTGCTACGGCCCTTTACGCGCTTTGCTGTTTTGGCGATAATCGGAAAAGGGCGGTGGATTGTGGTGCGGTGCCGATTTTAATGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGTAGGGAACATTTGGAAAGTTATGGTGGGTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAGCTCTAGAGGGATTCAGTATGCATTGTTGGCACTTACTTCGCTTTGCTTTCATAGCAAGGAAATGCTTTTGGTTACTCTGCAAGAAGGGGTTTTGGATATCTGTCTTGGGTTGGTTGATGATGATAATGAGAAAGTTAGGAGAAATTCATCCAATTTGATCCGGGTTCTTCAAAGCGACGGCAATCACCGGATGTATTGA 1113 0.4501 MASHLPDHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDEGHRTCPITKLPLPANPTLIPNHALRSLISTYTLLPPLHQIISQPETLISILKSSSSSSDSKIDSLRQLARLSKRDANFRRRLVDSGAVSAVLFCLDSSSGETKLQEKALSVLLNLSLDDDSKIGLVAEGAIDRVVAFLLREASSDCCALAATIITSLAVVEVNKGTIGAFPGAIEALVGILKDGKGRERKEAATALYALCCFGDNRKRAVDCGAVPILMRSVECGLERGVEVIGVLAKCKEGREHLESYGGCVKILVHVLRNGSSRGIQYALLALTSLCFHSKEMLLVTLQEGVLDICLGLVDDDNEKVRRNSSNLIRVLQSDGNHRMY* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1808 370 SUPERFAMILY ARM repeat 86 367 IPR016024 -
Tpr3g1808 370 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 362 - -
Tpr3g1808 370 SMART arm_5 159 200 IPR000225 GO:0005515
Tpr3g1808 370 SMART arm_5 116 158 IPR000225 GO:0005515
Tpr3g1808 370 SMART arm_5 280 321 IPR000225 GO:0005515
Tpr3g1808 370 PANTHER U BOX DOMAIN-CONTAINING 1 362 - -
Tpr3g1808 370 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Tpr3g1808 370 Gene3D - 83 209 IPR011989 -
Tpr3g1808 370 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Tpr3g1808 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 127 171 IPR000225 GO:0005515
Tpr3g1808 370 SUPERFAMILY RING/U-box 4 73 - -
Tpr3g1808 370 Gene3D - 210 369 IPR011989 -
Tpr3g1808 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Tpr3g1808 370 CDD RING-Ubox_PUB 9 50 IPR045210 -
Tpr3g1808 370 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1808 Tpr-Chr3 16176986 16178578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1808 1 361 U-box Gene Family AT4G21350 57.838 1.14e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1808 - - gmx:100785141 508.064