Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1805 ATGGAACAAGAAAATAACCATAGACTAAGTGTGTCTGTGGAAGATTTAGGTTTCAATAATGGTTCCAACATGAAGGGAAAATTGAGCCGGAAGCATTATGATGATGCCAGTCCAAAATTGTTCATATCCAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACATGGTTCAAGACTTTTGGTGCTTAGGTCTCTAGTACCAATCATCACAAGTATGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACCAAGATGTTGCAAAAGGAAGTTGAGATTCTTACAAAAGAGCTTGATGAAATGGAAGAAACAAGAAAGAAAAAAGCAGAGCAAAAAACATGTGAATCTTCTGCTGCTGGGGAAAAGATCAATATATCTTGGATAGAGGAAGAGATCCAGGTAGCAAAAATTGATGGCAGCAATATGTTATGGGCCAAGATGATCATTGAGAACAAGAGGGGAAGGTTCAAGAAATTAGTAGAGGATTTGAATAATTCAAACATTGAAATTATTGATCTTAGTGTTACAACTATAGAAGGAGCATATCATATTACTGCCACCTTAAAGGGAATGAGTGGTGAACCAATTGAGCTTTATCAAATTCCAACTATTATGAAGTTCAAGTAG 633 0.3618 MEQENNHRLSVSVEDLGFNNGSNMKGKLSRKHYDDASPKLFISKNLETERKRREKHGSRLLVLRSLVPIITSMNKASIIEDAITYTKMLQKEVEILTKELDEMEETRKKKAEQKTCESSAAGEKINISWIEEEIQVAKIDGSNMLWAKMIIENKRGRFKKLVEDLNNSNIEIIDLSVTTIEGAYHITATLKGMSGEPIELYQIPTIMKFK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1805 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 104 IPR036638 GO:0046983
Tpr3g1805 210 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 204 - -
Tpr3g1805 210 Coils Coil 86 113 - -
Tpr3g1805 210 Gene3D - 43 120 IPR036638 GO:0046983
Tpr3g1805 210 SMART finulus 46 95 IPR011598 GO:0046983
Tpr3g1805 210 Pfam Helix-loop-helix DNA-binding domain 47 90 IPR011598 GO:0046983
Tpr3g1805 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Tpr3g1805 210 PANTHER TRANSCRIPTION FACTOR DYT1 13 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1805 Tpr-Chr3 16138842 16148792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1805 41 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.304 9.66e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g1805 HLH 8.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1805 - - mtr:MTR_4g091910 252.677