Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1732 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAGTGGAGGATCCTTCTTTATGTCTTCATCAGTGGCATTTGAACTCTATTGATGAGTCTAACTCACTTCCAATAGCTTCTGCTTTTGGAGACACTTTACACCACCATTCATATATTTATCCAAACTTTAATCGCAGAACTTCAGTTGAAACTGCTCCGAAACTAGATACTCAATTTGTTTCGTACCCGAATCTTGTTTCATTTGTCGATTTGAATCACGTAAATCAGTTTGGTTTAACGAAGCCTAAGGATGAGATGGTTTGTCCACAAAACAGCAAGACAGCTCCTTCTGACATGATACCTCAAGGAACCTTTGAGGCCAAAAAGCTAGCGACACGTCCTAAACTCTCTCTACCTCAAGACCACATAATAGCTGAAAGAAAGCGGCGTGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAAAAGATGGACAAAGCTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAGGGATCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAAACTGTGGTGGTTGTGAAGAAATCACAACTACGCAATGATGTTGAAAATTCTTCTGCAGAATCTGGCGGACCCTTTGACGAGGAGCTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAATTCACTGTGAGAAAAGCAATGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAAACTTCATCTAAAAGTCACCAATAGCAGCGTCATGACATTTGGGAACTGTGCACTTGATATAACAATTATGGCCCAGATGGATAACGAATTTTACATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCGACTTTTGCATCTTTCATCGGAGGATGTTCCTTTAGTTCATACTAA 957 0.4044 MENISFIRGFPDQEIVEDPSLCLHQWHLNSIDESNSLPIASAFGDTLHHHSYIYPNFNRRTSVETAPKLDTQFVSYPNLVSFVDLNHVNQFGLTKPKDEMVCPQNSKTAPSDMIPQGTFEAKKLATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLKKLQEKVRDLEEEQNMKKNVETVVVVKKSQLRNDVENSSAESGGPFDEELPEIEARFCDRNVLIRIHCEKSNGVVEKTIHEIEKLHLKVTNSSVMTFGNCALDITIMAQMDNEFYMTVKDLVRNLRSTFASFIGGCSFSSY* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1732 318 Gene3D - 133 205 IPR036638 GO:0046983
Tpr3g1732 318 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 71 309 - -
Tpr3g1732 318 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 3 66 - -
Tpr3g1732 318 SMART finulus 137 186 IPR011598 GO:0046983
Tpr3g1732 318 PANTHER BHLH TRANSCRIPTION FACTOR 3 66 - -
Tpr3g1732 318 PANTHER BHLH TRANSCRIPTION FACTOR 71 309 - -
Tpr3g1732 318 Coils Coil 170 200 - -
Tpr3g1732 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 195 IPR036638 GO:0046983
Tpr3g1732 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Tpr3g1732 318 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Tpr3g1732 318 CDD bHLH_AtNAI1_like 131 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1732 Tpr-Chr3 15347941 15350029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1732 134 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.333 4.83e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g1732 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1732 - - vun:114179595 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1732 3 15347941 15350029 Tpr3g1732 3 15347941 15350029 ECH
Tpr3g1732 3 15347941 15350029 Tpr2g2522 2 30083962 30087045 PCT