Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1715 ATGGGGAGAGGAAAGATTGTGATACGAAGGATTGAGAATTTGACTAGCCGGCAAGTAACTTTTTCAAAGAGAAGAAAAGGATTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTAATTTTGTTCTCTTCAACTCACAAGCTTTATGACTATGCAAGCTCCAGCATGGAATCTGTTATCGAGCGTTATAACAAATTAATGGAGGACCGTCATCAAGCAGTGGATCCTACTTTGGATGTCAAGTTTTGGCAAAGAGAAGCAGCAAGCTTGAGGCAACAATTGCAGCACTTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAACTATCTAGTTTGGATTTTGATGAGCTGAGGCATCTAGAACACCAATTGGAGATGAGTTTGAAAAGCATTCGCACAAGAAAGGGTCAAATTTATAGTGATGATATCAATGAATTACACAAAAAGGGAAGCCTTAGTAGTAAAGAAAATGAAGAACTTCATAAGAAGATAGACCAAATTGGTGAGGAAAATGCAGAACTAGAGAAGGTTATTGGTGCAAGGCGTAGGGAATATGCAACAACCAATCCTTCATACAGTACTAGGATCAGCTATGGATATGATGAACCAATCAGTCTACAGCTAAGGCAGCCACAACCCCAACAGTGA 666 0.3949 MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMESVIERYNKLMEDRHQAVDPTLDVKFWQREAASLRQQLQHLNDSQRQLMGQELSSLDFDELRHLEHQLEMSLKSIRTRKGQIYSDDINELHKKGSLSSKENEELHKKIDQIGEENAELEKVIGARRREYATTNPSYSTRISYGYDEPISLQLRQPQPQQ* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1715 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 220 - -
Tpr3g1715 221 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Tpr3g1715 221 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr3g1715 221 Coils Coil 163 183 - -
Tpr3g1715 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Tpr3g1715 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 Coils Coil 86 113 - -
Tpr3g1715 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1715 221 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Tpr3g1715 221 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1715 221 MobiDBLite consensus disorder prediction 200 221 - -
Tpr3g1715 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1715 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1715 Tpr-Chr3 15207864 15212096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1715 1 219 MADS-box Gene Family AT2G14210 52.915 1.27e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g1715 K-box 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1715 K09264 - gmx:100808145 269.626