Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1690 ATGGCTTCTTCATGGTTTCTCAAACTGGTTTTCAAATGCCTTCATCACTTAGCATGGCTTCTTCTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACACGCAATGGAGACTGATTCCTATGAAGAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGAGTATGCTTTTATGAGCCTTCTTCCATGGTTTCACCTTTGGCCGTACATTAAGCTAATGATCGTCTTCTGGCTCATCATGCCTGACTTTGGACGAGCTTCTTATGTTTATCATAATCTTATTTGCTCCATGAAACCGCAAATAGTCACATACTGGAGGAATTGTTTTGTAGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGTAAGAACACAATGTGTAGGCCTGATGCAGACGTGTCGAATGAAATCAAAGCTGTTGAGATGCTAAAGACAAATGGGGAAAGACTCCAAACAGAACACAAAGGTTTGGAGGCTATTGTGAAAAGAGAAATTCCTGCAACCAAACAAATGACCTATGCTAATATTGAGGCAAGTCGAAAGGTATCATCAGCCATAGTAGAAACCAAAGGAATAATGGGAAGAGACCCAGCTGGTGGAGAGATTCCTCGGAGTTCTACACAGAAAGAAGTGCAGAAAGAGTGGACTTGTGCTTTGTGTTTGGTAAAAACATCGAGCGAGATAACCTTGAATTCCCACCTCAATGGGAGGAGACACAGGGAAGCTTGTGAAGCAGCATCCGCAACTTTGAAAGCAAAGAAGCAACCTGCTTCGCAAAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTGCATGGCCTCTCACATAAAAGGGGTGAAGCACTTGTCTAATATGAAAAGTTGA 978 0.4049 MASSWFLKLVFKCLHHLAWLLLALVYPMCASVHAMETDSYEETKHLISYWILLSLIYLFEYAFMSLLPWFHLWPYIKLMIVFWLIMPDFGRASYVYHNLICSMKPQIVTYWRNCFVEKDNFLMHAERYMKENGTEALEKLIASKNTMCRPDADVSNEIKAVEMLKTNGERLQTEHKGLEAIVKREIPATKQMTYANIEASRKVSSAIVETKGIMGRDPAGGEIPRSSTQKEVQKEWTCALCLVKTSSEITLNSHLNGRRHREACEAASATLKAKKQPASQKNVLPEPFRMINSKLICKVCNVMLPSEECMASHIKGVKHLSNMKS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1690 325 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Tpr3g1690 325 SMART c2h2final6 236 260 IPR013087 -
Tpr3g1690 325 SMART c2h2final6 295 319 IPR013087 -
Tpr3g1690 325 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 281 - -
Tpr3g1690 325 Pfam Zinc-finger of C2H2 type 296 319 - -
Tpr3g1690 325 Pfam Zinc-finger of C2H2 type 236 260 - -
Tpr3g1690 325 SUPERFAMILY beta-beta-alpha zinc fingers 272 324 IPR036236 -
Tpr3g1690 325 Gene3D Classic Zinc Finger 222 266 - -
Tpr3g1690 325 Gene3D Classic Zinc Finger 271 325 - -
Tpr3g1690 325 SMART ZnF_U1_5 233 267 IPR003604 GO:0003676|GO:0008270
Tpr3g1690 325 SMART ZnF_U1_5 292 325 IPR003604 GO:0003676|GO:0008270
Tpr3g1690 325 PANTHER HVA22-LIKE PROTEINS 1 281 IPR004345 -
Tpr3g1690 325 SUPERFAMILY beta-beta-alpha zinc fingers 220 267 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1690 Tpr-Chr3 15058689 15061507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1690 236 324 C2H2 Transcription Factor Family AT2G19380 30.693 7.00e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1690 - - mtr:MTR_4g093270 385.956