Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1688 ATGGATCCTAATCTCCTAAAATATAAACCCTTTAGTTATTTTAGAAAACAAGGTGAGAGTTCGAACCATCGGATTTCCCACTTTTTTTACATATATCTTCACATTATTGGCCTTTTACCCTTCTTTTATTTCCTTCATTTTTTTTTCAGGCTTGTTGTTGCTCTGTTGTATCCTATGTGTGCTTCCATAAAAGCAATTGAGACTGATTCCTATGAAGAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGATTATGCTTTAATGAGCCTTATTCCATGGTTTCACCTTTGGCCGTACATTAAGCTAATGATCGTCTTCTGGCTCATCAGACCTGACTTTCGACGAGCTTCTTATGTTTATAATAACCTTATGCGCATCATGAAACCACAAATAGTCACATGCTGGAGGAAGTGTTTTGTAGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGTAAGAACACAATGTGTAGGCCTGATGCAGACGTGTCGAATGAAATCAAAGCTGTTGAGATGCTAAAGACAAATGGGGAAAGACTCCAAACAGAACACAAAGGTTTGGAGGCTATTGTGAAAAGAGAAATTCCTGCAACCAAACAAATGACCTATGCTAATATTGAGGCAAGTCGAAAGGTATCATCAGCCATAGTAGAAACCAAAGGAATAATGGGAAGAGACCCAGCTGGTGGAGAGATTCCTCGGAGTTCTACACAGAAAGAAGTGCAGAAAGAGTGGACTTGTGCTTTGTGTTTGGTAAAAACATCGAGCGAGATAACCTTGAATTCCCACCTCAATGGGAGGAGACACAGGGAAGCTTGTGAAGCAGCATCCGCAACTTTGAAAGCAAAGAAGCAACCTGCTTCGCAAAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTGCATGGCCTCTCACATAAAAGGGGTGAAGCACTTGTCTAATATGAAAAGTTGA 1071 0.3875 MDPNLLKYKPFSYFRKQGESSNHRISHFFYIYLHIIGLLPFFYFLHFFFRLVVALLYPMCASIKAIETDSYEETKHLISYWILLSLIYLFDYALMSLIPWFHLWPYIKLMIVFWLIRPDFRRASYVYNNLMRIMKPQIVTCWRKCFVEKDNFLMHAERYMKENGTEALEKLIASKNTMCRPDADVSNEIKAVEMLKTNGERLQTEHKGLEAIVKREIPATKQMTYANIEASRKVSSAIVETKGIMGRDPAGGEIPRSSTQKEVQKEWTCALCLVKTSSEITLNSHLNGRRHREACEAASATLKAKKQPASQKNVLPEPFRMINSKLICKVCNVMLPSEECMASHIKGVKHLSNMKS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1688 356 SMART c2h2final6 267 291 IPR013087 -
Tpr3g1688 356 SMART c2h2final6 326 350 IPR013087 -
Tpr3g1688 356 Pfam Zinc-finger of C2H2 type 327 350 - -
Tpr3g1688 356 Pfam Zinc-finger of C2H2 type 267 291 - -
Tpr3g1688 356 PANTHER HVA22-LIKE PROTEINS 45 312 IPR004345 -
Tpr3g1688 356 SUPERFAMILY beta-beta-alpha zinc fingers 301 355 IPR036236 -
Tpr3g1688 356 SUPERFAMILY beta-beta-alpha zinc fingers 251 298 IPR036236 -
Tpr3g1688 356 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 45 312 - -
Tpr3g1688 356 SMART ZnF_U1_5 323 356 IPR003604 GO:0003676|GO:0008270
Tpr3g1688 356 SMART ZnF_U1_5 264 298 IPR003604 GO:0003676|GO:0008270
Tpr3g1688 356 Pfam TB2/DP1, HVA22 family 58 132 IPR004345 -
Tpr3g1688 356 Gene3D Classic Zinc Finger 253 297 - -
Tpr3g1688 356 Gene3D Classic Zinc Finger 302 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1688 Tpr-Chr3 15019089 15021016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1688 267 355 C2H2 Transcription Factor Family AT2G19380 30.693 8.28e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1688 - - mtr:MTR_4g093270 375.941