Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g1687 | ATGACTTCTTCATTGTTTCTCAATCTCACTTTCAAATGCCTTCATCATTTCGCATGGCCTTTTCTTGCTCTGCTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCTATGAACAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGAATATGCTTTAATCAGCCTTATTCCATGGTTTCAGCCCTGGCTGTACATTAAGCTAATGATAATTTTCTGGCTCACTATACCGGACTTTGGACGAGCTTCTTATGTTTACAATAACCTTATTCGCTCCATGAAACCCAAAATAGACACATGGAGGAAGTGTTTTGTTGAGGAAGATAACTTTTTAATGCATGTAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGCTTAGGCCTGATGCCGAAGTGATCACAAATGAATTCATAGCTACTGGTAATAATGAAATGCTAAAGAAGCATCTTGTGCAGACAAATGGCGAAAGACTCACAACTGAACACAAAGTCATCAAAGATTTCGAGACTATTGAGCAAAAAGAAATTCCTGCAACAACGCTAAACACAATGCATAGGCCTGATGCAGAGGTGACAAATGAAATCATAGATAATGATAATAAAGAAATGCTAAAGACGAATGGAGACAGGCTCCAATCAGAGAACAAAGACATCAAAGATTTGGTGGCTATTGAGAAAAAAGAAATTCCTGCAACCAAACAAAGAACCTATGCTGATATAGTAGCGAGTCAAACGACATCATCAACCATAGTAGAAACCAAAGAAATAGCTGGGAGAGACACAGCTGGTGGAGAGCATCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAGAGAGTGGACTTGTGCTTTATGTTTGGTAACATCTTCGAGCGAGAAAGACTTGAATTCCCACCTTAATGGGAGGAGACACAGGAAGGCTTGTGAAGCCGCGGGCTTGAAAGTAGCAAAGAAACTACCTGCTACGCAGAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTACATGGCCTCTCACATAAAAGGGTGGAAGCACTTGTCTAATATGAAAAGTTGA | 1170 | 0.3932 | MTSSLFLNLTFKCLHHFAWPFLALLYPMCASVQAIETDSYEQTKHLISYWILLSLIYLFEYALISLIPWFQPWLYIKLMIIFWLTIPDFGRASYVYNNLIRSMKPKIDTWRKCFVEEDNFLMHVERYMKENGTEALEKLIASKNTMLRPDAEVITNEFIATGNNEMLKKHLVQTNGERLTTEHKVIKDFETIEQKEIPATTLNTMHRPDAEVTNEIIDNDNKEMLKTNGDRLQSENKDIKDLVAIEKKEIPATKQRTYADIVASQTTSSTIVETKEIAGRDTAGGEHPQSSSTLKEVQREWTCALCLVTSSSEKDLNSHLNGRRHRKACEAAGLKVAKKLPATQKNVLPEPFRMINSKLICKVCNVMLPSEEYMASHIKGWKHLSNMKS* | 390 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1687 | 389 | Pfam | Zinc-finger of C2H2 type | 360 | 383 | - | - | |
| Tpr3g1687 | 389 | Pfam | Zinc-finger of C2H2 type | 301 | 325 | - | - | |
| Tpr3g1687 | 389 | Gene3D | Classic Zinc Finger | 285 | 331 | - | - | |
| Tpr3g1687 | 389 | Gene3D | Classic Zinc Finger | 337 | 389 | - | - | |
| Tpr3g1687 | 389 | SUPERFAMILY | beta-beta-alpha zinc fingers | 285 | 331 | IPR036236 | - | |
| Tpr3g1687 | 389 | SUPERFAMILY | beta-beta-alpha zinc fingers | 348 | 388 | IPR036236 | - | |
| Tpr3g1687 | 389 | PANTHER | HVA22-LIKE PROTEINS | 1 | 202 | IPR004345 | - | |
| Tpr3g1687 | 389 | PANTHER | HVA22-LIKE PROTEINS | 202 | 332 | IPR004345 | - | |
| Tpr3g1687 | 389 | SMART | ZnF_U1_5 | 356 | 389 | IPR003604 | GO:0003676|GO:0008270 | |
| Tpr3g1687 | 389 | SMART | ZnF_U1_5 | 298 | 332 | IPR003604 | GO:0003676|GO:0008270 | |
| Tpr3g1687 | 389 | SMART | c2h2final6 | 301 | 325 | IPR013087 | - | |
| Tpr3g1687 | 389 | SMART | c2h2final6 | 359 | 383 | IPR013087 | - | |
| Tpr3g1687 | 389 | Pfam | TB2/DP1, HVA22 family | 27 | 102 | IPR004345 | - | |
| Tpr3g1687 | 389 | PANTHER | TB2/DP1, HVA22 FAMILY PROTEIN | 202 | 332 | - | - | |
| Tpr3g1687 | 389 | PANTHER | TB2/DP1, HVA22 FAMILY PROTEIN | 1 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g1687 | Tpr-Chr3 | 15015642 | 15018913 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1687 | 301 | 388 | C2H2 Transcription Factor Family | AT2G19380 | 28.000 | 3.69e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g1687 | - | - | mtr:MTR_4g093270 | 363.999 |