Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1686 ATGGCTTCTTTGTGGTTTCTCAACCTCCTTTTCATATGCTTTCATCACTTCACATGGCTTGTTGTTGCTCTGTTGTATCCTATGCGTGCTTCCATAAAAGCAATTGAGACTGATTCCTATGAAGAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGATTTTGCTTTAATGAGCCTTATTCCATGGTTTCACCTTTGGCCGTACATTAAGCTAATGATCGTCTTCTGGCTCATCAGACCTGACTTTCGACGAGCTTCTTATGTTTATAATAACCTTATGCGCATCATGAAACCACAAATAGTCACATGCTGGAGGAAGTGTTTTGTAGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGTAAGACAAATGGGGAAAGATTCCAAACAGAACACAAAGACATCAAAGATTTGGAGGCTATTGTGAAAAGAGAAATTCCTGCAACCAAGCAAATGACCTATGCTAATATTGAGGCAAGTCGAAAGGTATCATCAGCCATAGTAGAAACCAAAGGAATACTGGGAAGAGACCCAGCTGGCGGAGAGATTCCTCGGAGTTCTACACAGAAAGATGTGCAGAAAGAGTGGATTTGTGCTTTGTGTTTGGTAAAAACATCGAGCGAGATAACCTTGAATTCCCACCTCAATGGGAGGAGACACAGGGAAGCTTGTGAAGCAGCATCCGCAACTTTGAAAGCAAAGAAGCAACCTGCTTCGCAAAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTGCATGGCCTCTCACATAAAAGGGGTGAAGCACTTGTCTAATATGAAAAGTTGA 924 0.3983 MASLWFLNLLFICFHHFTWLVVALLYPMRASIKAIETDSYEETKHLISYWILLSLIYLFDFALMSLIPWFHLWPYIKLMIVFWLIRPDFRRASYVYNNLMRIMKPQIVTCWRKCFVEKDNFLMHAERYMKENGTEALEKLIASKTNGERFQTEHKDIKDLEAIVKREIPATKQMTYANIEASRKVSSAIVETKGILGRDPAGGEIPRSSTQKDVQKEWICALCLVKTSSEITLNSHLNGRRHREACEAASATLKAKKQPASQKNVLPEPFRMINSKLICKVCNVMLPSEECMASHIKGVKHLSNMKS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1686 307 Gene3D Classic Zinc Finger 253 307 - -
Tpr3g1686 307 Gene3D Classic Zinc Finger 204 248 - -
Tpr3g1686 307 SMART c2h2final6 218 242 IPR013087 -
Tpr3g1686 307 SMART c2h2final6 277 301 IPR013087 -
Tpr3g1686 307 Pfam Zinc-finger of C2H2 type 218 242 - -
Tpr3g1686 307 Pfam Zinc-finger of C2H2 type 278 301 - -
Tpr3g1686 307 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Tpr3g1686 307 PANTHER HVA22-LIKE PROTEINS 1 263 IPR004345 -
Tpr3g1686 307 SUPERFAMILY beta-beta-alpha zinc fingers 254 306 IPR036236 -
Tpr3g1686 307 SUPERFAMILY beta-beta-alpha zinc fingers 202 249 IPR036236 -
Tpr3g1686 307 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 263 - -
Tpr3g1686 307 SMART ZnF_U1_5 215 249 IPR003604 GO:0003676|GO:0008270
Tpr3g1686 307 SMART ZnF_U1_5 274 307 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1686 Tpr-Chr3 15006313 15008365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1686 218 306 C2H2 Transcription Factor Family AT2G19380 30.693 3.59e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1686 - - mtr:MTR_4g093270 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1686 3 15006313 15008365 Tpr3g1686 3 15006313 15008365 ECH