Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1684 ATGGCTTCTTCATGGTTTCTCAAACTGGTTTTCAAATGCCTTCATCACTTAGCATGGCTTCTTCTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACACGCAATCGAGACCAATTCCTATGAAGAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGAGTATGCTTTTATGAGCCTTCTTCCATGGTTTAACCTTTGGCCGTACATTAAGCTAATGATCGTCTTCTGGCTCATCATGCCTGACTTTGGACGAGCTTCTTATGTTTATCATAATCTTATTTGCTCCATGAAACCGCAAATAGTCACATACTGGAGGAATTGTTTTGTAGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGCAAGAAGCATCTTGTGCAGACAAATGGCGAAAGACTCACAACTGAACACAAAGTCATCAAAGATTTCGAGACTATTGAGCAAAAAGAAATTCCTGCAACAACGCTAAACACAATGCATAGGCCTGATGCAGAGGTGACAAATGAAATCATAGATAATGATAATAAAGAAATGATAAAGACGAATGGAGAAAGGCTCCAATCAGAGAACAAAGATATCAAAGATTTGGTGGCTATTGAGAAAAAAGAAATTCCTGCAACCAAACAAAGAACCTATGCTGATATAGTAGCGAGTCAAACGACATCATCAACCATAGTAGAAACCAAAGAAATAGCTGGGAGAGACACAGCTGGTGGAGAGCATCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAGAGAGTGGACCTGTGTTTTATGTTTGGTAACATCTTTGAGCGAGAAAGACTTGAATTCCCACCTTAATGGGAGGAGACACAGGAAGGCTTGTGAAGCTGCGGGTTTGAAAGTAGCAAAGAAACTACCTGCTACGCAGAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAGTATGTAAAGTGTGTAGTGTTATGCTTTCAAGTGAAGAGTACATGGCCTCTCACATAAAAGGGTGGAAGCACTTGTCTAATATGAAAAGTTGA 1098 0.3944 MASSWFLKLVFKCLHHLAWLLLALVYPMCASVHAIETNSYEETKHLISYWILLSLIYLFEYAFMSLLPWFNLWPYIKLMIVFWLIMPDFGRASYVYHNLICSMKPQIVTYWRNCFVEKDNFLMHAERYMKENGTEALEKLIASKKHLVQTNGERLTTEHKVIKDFETIEQKEIPATTLNTMHRPDAEVTNEIIDNDNKEMIKTNGERLQSENKDIKDLVAIEKKEIPATKQRTYADIVASQTTSSTIVETKEIAGRDTAGGEHPQSSSTLKEVQREWTCVLCLVTSLSEKDLNSHLNGRRHRKACEAAGLKVAKKLPATQKNVLPEPFRMINSKLVCKVCSVMLSSEEYMASHIKGWKHLSNMKS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1684 365 SUPERFAMILY beta-beta-alpha zinc fingers 261 307 IPR036236 -
Tpr3g1684 365 SUPERFAMILY beta-beta-alpha zinc fingers 324 364 IPR036236 -
Tpr3g1684 365 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Tpr3g1684 365 ProSitePatterns Zinc finger C2H2 type domain signature. 337 359 IPR013087 -
Tpr3g1684 365 Gene3D Classic Zinc Finger 261 307 - -
Tpr3g1684 365 Gene3D Classic Zinc Finger 313 365 - -
Tpr3g1684 365 SMART c2h2final6 277 301 IPR013087 -
Tpr3g1684 365 SMART c2h2final6 335 359 IPR013087 -
Tpr3g1684 365 SMART ZnF_U1_5 332 365 IPR003604 GO:0003676|GO:0008270
Tpr3g1684 365 SMART ZnF_U1_5 274 308 IPR003604 GO:0003676|GO:0008270
Tpr3g1684 365 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 308 - -
Tpr3g1684 365 PANTHER HVA22-LIKE PROTEINS 1 308 IPR004345 -
Tpr3g1684 365 Pfam Zinc-finger of C2H2 type 336 359 - -
Tpr3g1684 365 Pfam Zinc-finger of C2H2 type 277 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1684 Tpr-Chr3 14991396 14993855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1684 276 359 C2H2 Transcription Factor Family AT2G19380 32.632 8.98e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1684 - - mtr:MTR_4g093270 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1684 3 14991396 14993855 Tpr3g1684 3 14991396 14993855 ECH